Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0218.Seq
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    29   3.6  
06_01_1079 + 8832779-8833960                                           27   8.3  
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993...    27   8.3  
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954...    27   8.3  

>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 359 STKINARGVTRPKITTMIRLTKPNSQNQY 445
           S+ ++ARGV  P +T ++++  P  + QY
Sbjct: 747 SSDVSARGVDYPNVTLVVQMGVPTDREQY 775


>06_01_1079 + 8832779-8833960
          Length = 393

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 490 TEKDSKKKCVAVCEEILILAIW 425
           T+ D++K+ VAV  E+L L +W
Sbjct: 238 TDADAEKRAVAVVHELLSLTLW 259


>01_05_0722 +
           24598426-24598649,24599113-24599219,24599319-24599374,
           24599469-24599675,24599757-24599963,24600037-24600123,
           24600167-24600208,24600209-24600304,24600406-24600621,
           24600693-24600875,24601014-24601241
          Length = 550

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 359 STKINARGVTRPKITTMIRLTKPNSQNQY 445
           S+ ++ARGV  P +T +I++  P  + QY
Sbjct: 396 SSDVSARGVDYPDVTLVIQVGLPADREQY 424


>01_05_0721 +
           24594815-24594834,24595207-24595313,24595417-24595472,
           24595562-24595810,24595871-24596077,24596157-24596243,
           24596331-24596426,24596500-24596715,24596908-24597090,
           24597222-24597449
          Length = 482

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 359 STKINARGVTRPKITTMIRLTKPNSQNQY 445
           S+ ++ARGV  P +T +I++  P  + QY
Sbjct: 328 SSDVSARGVDYPDVTLVIQVGVPADRQQY 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,464
Number of Sequences: 37544
Number of extensions: 230560
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)