Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0218.Seq
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical ...    28   4.2  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   9.8  

>AC006615-6|AAK68228.1|  531|Caenorhabditis elegans Hypothetical
           protein C36B7.2 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/51 (21%), Positives = 27/51 (52%)
 Frame = -3

Query: 417 KRIIVVILGRVTPRAFIFVEDVLYVSSVNQRSVTSCVRT*VQKFFYEFLFI 265
           +++ + ++ ++ PR +   E ++Y+SS++      CVR      F  F ++
Sbjct: 219 QKVAIRMVSKLAPRIYRETEMIMYISSIDPDHTFDCVRMLDYNVFRGFHYV 269


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 493  STEKDSKKKCVAVCEEILILAIWLSQTDHSCNFGA 389
            S EK  KK+C  VC+   + A  L      CN G+
Sbjct: 1022 SDEKGCKKECAIVCDNSCVHADDLCDGKKKCNDGS 1056


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,665
Number of Sequences: 27780
Number of extensions: 253315
Number of successful extensions: 553
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)