Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0218.Seq
         (584 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   6.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   6.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   6.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 420 LSQIAKISISSQTATHFFLLSFSVLNFRSLINLKNNN 530
           L ++  +++S    TH     F  L F  +++L+NN+
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNS 370



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 2/14 (14%)
 Frame = -2

Query: 409 HSCNFGACDA--TC 374
           H C+F ACD   TC
Sbjct: 748 HCCDFDACDCEMTC 761


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 30  TFNSITLHKSLLERKRK 80
           T NS+  HKS+  R++K
Sbjct: 413 TLNSLNNHKSIYHRRQK 429


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 494 EFPKFDKLKK 523
           EF K+DKLKK
Sbjct: 149 EFSKYDKLKK 158


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 494 EFPKFDKLKK 523
           EF K+DKLKK
Sbjct: 164 EFSKYDKLKK 173


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 494 EFPKFDKLKK 523
           EF K+DKLKK
Sbjct: 52  EFSKYDKLKK 61


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 30 TFNSITLHKSLLER 71
          T NS+T HKSL  R
Sbjct: 47 TKNSLTTHKSLQHR 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,495
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)