Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0217.Seq
         (518 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YCU3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q23TW7 Cluster: Importin-beta N-terminal domain contain...    33   5.2  

>UniRef50_Q4YCU3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 86

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 251 ISEGCKEVEAKVLIQNIQQILHFXTLIALIXFSENQXVFCLLNNII 388
           I   C  + A  + + +++I+HF   I    FS+    FC++NNII
Sbjct: 41  IHRRCMFIHAFNIYKYVKKIIHFFIKILYKLFSKMDDYFCVINNII 86


>UniRef50_Q23TW7 Cluster: Importin-beta N-terminal domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Importin-beta N-terminal domain containing protein -
           Tetrahymena thermophila SB210
          Length = 1036

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 329 IALIXFSENQXVFCLLNNIIEMFXHEPTVNFY*LLNNISVVFY 457
           I L+   +N+ + C L  I+E F +E T   Y L N++S+ FY
Sbjct: 555 IKLMQQIDNENLVCALECIVENFTNEITPFAYDLANHLSIAFY 597


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,915,252
Number of Sequences: 1657284
Number of extensions: 4814982
Number of successful extensions: 6006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6005
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)