Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0217.Seq
         (518 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   2.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   3.7  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   8.7  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   8.7  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   8.7  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 126 IXITKEY*FSHMFILLIRYLECFRRVRLKPKQIKI 230
           I + KE+ F   +I + R  E    + L  +QIKI
Sbjct: 169 IELEKEFTFVSKYITIKRKSELAENLGLSERQIKI 203


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 406 TYSXLLLIIK*YFSCVLFYXXHSILMEFI 492
           T S  + +I  YF+C++F    S+++  +
Sbjct: 266 TTSDAVPLIGTYFNCIMFMVASSVVLTVV 294


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 406 TYSXLLLIIK*YFSCVLFYXXHSILMEFI 492
           T S  + +I  YF+C++F    S+++  +
Sbjct: 266 TTSDAVPLIGTYFNCIMFMVASSVVLTVV 294


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 439 YFSCVLFYXXHSILMEFI 492
           YF+C++F    S+++  +
Sbjct: 277 YFNCIMFMVASSVVLTVV 294


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 439 YFSCVLFYXXHSILMEFI 492
           YF+C++F    S+++  +
Sbjct: 277 YFNCIMFMVASSVVLTVV 294


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 5/18 (27%), Positives = 12/18 (66%)
 Frame = +1

Query: 439 YFSCVLFYXXHSILMEFI 492
           YF+C++F    S+++  +
Sbjct: 277 YFNCIMFMVASSVVLTVV 294


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  NKXEIIKFVCVAK 71
           N  E+IKF+ +AK
Sbjct: 717 NSDELIKFISIAK 729


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 VLFYXXHSILMEFIFYWITVI 513
           V+ Y  +   + F FYW+ V+
Sbjct: 314 VVIYTFNLFYLCFCFYWLLVM 334


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 451 VLFYXXHSILMEFIFYWITVI 513
           V+ Y  +   + F FYW+ V+
Sbjct: 270 VVIYTFNLFYLCFCFYWLLVM 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,287
Number of Sequences: 336
Number of extensions: 1340
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)