Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0216.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 117 5e-27
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 116 1e-26
07_03_1639 + 28305801-28305958,28306240-28306249 29 1.8
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 1.8
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 29 1.8
07_01_0217 + 1620625-1621419,1621982-1622152,1622581-1622865,162... 29 2.4
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 29 3.2
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 28 4.3
11_04_0314 - 16277292-16277927,16278385-16278514,16278934-162792... 28 4.3
04_03_0266 + 13648287-13649099,13649186-13649524 28 4.3
03_02_0050 + 5272471-5274861 28 4.3
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 28 4.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 5.6
09_06_0281 + 22014394-22015534,22016041-22017056 28 5.6
02_02_0221 + 8006708-8006950,8007049-8007252,8007559-8007750,800... 28 5.6
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 7.5
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 27 7.5
02_05_0067 + 25557975-25558553 27 7.5
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 7.5
08_02_1468 - 27338052-27339506 27 9.9
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 117 bits (282), Expect = 5e-27
Identities = 52/74 (70%), Positives = 64/74 (86%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 214 ARVRKNTEARRKGR 255
+R R+ EA++KGR
Sbjct: 61 SRARRAHEAKQKGR 74
Score = 116 bits (278), Expect = 2e-26
Identities = 56/106 (52%), Positives = 68/106 (64%)
Frame = +3
Query: 231 HRST*KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 410
H + KG H G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 411 AKGNVFKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
KGN+FKNKRVLME IH+ KAEKAR K L+ EA+R K +R+R
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRER 172
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 116 bits (279), Expect = 1e-26
Identities = 51/74 (68%), Positives = 64/74 (86%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 214 ARVRKNTEARRKGR 255
+R R+ EA++KGR
Sbjct: 61 SRARRAHEAKQKGR 74
Score = 116 bits (278), Expect = 2e-26
Identities = 56/106 (52%), Positives = 68/106 (64%)
Frame = +3
Query: 231 HRST*KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 410
H + KG H G+GKRRGT AR+P K LW AKKID+H+YH +YMK
Sbjct: 67 HEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMK 126
Query: 411 AKGNVFKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
KGN+FKNKRVLME IH+ KAEKAR K L+ EA+R K +R+R
Sbjct: 127 VKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRER 172
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 405 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLNRPGEAR 518
MK KGN+ NKR + +AEKAR + L+ EA+
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAK 38
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 153 VLSGVGVCDLIDFIWIQPHLLFTTSHNRGCKPLLQLEGTHPDTV 22
VL G D D WI PH T +R C +L LEG DT+
Sbjct: 519 VLDQEGWFDTGDIGWIAPHC--PTGPSRKCGGMLVLEGRAKDTI 560
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 214 ARVRKNTEARRKGRTVAL 267
NT RK + A+
Sbjct: 162 IENSPNTVTVRKDNSEAI 179
>07_01_0217 +
1620625-1621419,1621982-1622152,1622581-1622865,
1623113-1623262
Length = 466
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 307 FCGIRALAVPLLLPKPQCDPFYVLLCFC 224
F GIR L+V L KP C P V C C
Sbjct: 309 FAGIRKLSVNLWWVKPPCPPELVSYCPC 336
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = +1
Query: 22 HRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK 192
+RVR L K V R LDP +NE N R N+ IKD L ++
Sbjct: 530 YRVRAIDTNLLKLTWKHVHRKAPHVALLDPAVVNETTLKNDRANMMGYIKDCLFARQ 586
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 49 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 219
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 220 VRKNTEARRKGR 255
+ T RKGR
Sbjct: 806 DEETTSISRKGR 817
>11_04_0314 -
16277292-16277927,16278385-16278514,16278934-16279217,
16279308-16279431,16280442-16280530,16280630-16280706,
16280790-16280922,16282131-16282211,16282372-16282539
Length = 573
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 520 RRASPGRLSIFVLAFSAFFLWMYSMST 440
RR P RL + VLA A LW++S S+
Sbjct: 14 RRRGPARLWVAVLALLAGTLWLFSSSS 40
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 88 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 234
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>03_02_0050 + 5272471-5274861
Length = 796
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 542 ACLLHLIAXGLTWSVKHLRPGLLSLLPVDVL-HEHTLVLEHI 420
+CL L+ +HL P LLS +P+D L H H +L H+
Sbjct: 91 SCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHL 132
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +1
Query: 49 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 219
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 220 VRKNTEARRKGR 255
+ T RKGR
Sbjct: 757 DEETTSISRKGR 768
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 103 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 207
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 204 YCYRFLDDETILDHLTDVLSGVGVCDLID 118
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>02_02_0221 +
8006708-8006950,8007049-8007252,8007559-8007750,
8007860-8008098,8009756-8009851,8009966-8010058,
8011481-8011561,8012432-8012518,8012904-8013033,
8013223-8013528,8013749-8013772,8014162-8014240,
8014572-8014708,8015427-8015477
Length = 653
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 153 HP*DDQGWSRHQETCSSTLPRSCPQKHRST*KGSHCGFG 269
HP D WS H E ++ + +++ + SHCG G
Sbjct: 14 HPSDPNWWSSHAEHKLGSISLTKQERNSGSPGSSHCGEG 52
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 58 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 183
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 27.5 bits (58), Expect = 7.5
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = -1
Query: 299 HTRIGCTSSLTKATVRPFLRASVFLRTRARECTATGFLMTRPSLIILRMFCLELVFAISL 120
H R+ ++L +T+R + L A C++ FL P +++L + A S
Sbjct: 174 HRRLAAAATLFSSTLRTARALNSLL---AAICSSPAFLRFAPKVLLLAAPSVS-PNATSF 229
Query: 119 ISFGSNHTFFLPHRITEAASLFCSLRELILTR*DPTHTR 3
S T HR T AA L C + L+L DP R
Sbjct: 230 HILTS--TLCQAHRPTAAADLLCCMPSLLLDP-DPASCR 265
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 441 HACS*THYPSPSCRVSGIDACQSSW 367
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 88 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 249
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
>08_02_1468 - 27338052-27339506
Length = 484
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 255 ATLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDL 124
A L C FA + GV+ F D TIL + L +G +L
Sbjct: 316 AALGVVACAFAASLRGVWARMFTADATILRLASSALPILGAAEL 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,814
Number of Sequences: 37544
Number of extensions: 336942
Number of successful extensions: 885
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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