Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0216.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              135   2e-32
SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)          32   0.27 
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    28   5.8  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                27   7.6  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)        27   7.6  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  135 bits (327), Expect = 2e-32
 Identities = 64/101 (63%), Positives = 74/101 (73%)
 Frame = +3

Query: 246 KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 425
           KG H G GKR+GTANARMPQK +W                AKKID H+YHSLYMK+KGNV
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNV 159

Query: 426 FKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
           FKNKRVLMEYIH+KKAEKAR+K+L+   EARRN  K A++R
Sbjct: 160 FKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQR 200



 Score =  127 bits (307), Expect = 5e-30
 Identities = 57/77 (74%), Positives = 68/77 (88%)
 Frame = +1

Query: 25  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 204
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 205 HSRARVRKNTEARRKGR 255
           HSRARVRK  EAR KGR
Sbjct: 86  HSRARVRKADEARSKGR 102


>SB_48272| Best HMM Match : HCO3_cotransp (HMM E-Value=0.0065)
          Length = 202

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 367 AVLYFRSNFLKTLCLCTHSSFCGIRALAVPLLLPKPQCDPFYVLLCFCGHERGSVLLQVS 188
           AV   +       C+    S CGI  +A    +   QC  F   +C+C  E G++ L +S
Sbjct: 91  AVTSIKQELTNPYCIGVPYSSCGICGVAGSGNVSTSQCSAFGENMCYCSREAGTLYLLLS 150


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 346  NFLKTLCLCTHSSFCGIRALAVPLLLPKPQCDPFYVLLCFCG 221
            ++++    CT   +C  + L     LP+ QCDP YV  C+ G
Sbjct: 1025 HYIENCTKCTPGWYCDAQGLP----LPRAQCDPGYV--CYLG 1060


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 139 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRTVALVREEVQ 285
           +S  NIRK IKDG   K   P    S  +VRK +  RR     + V++  Q
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQ 145


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 67  ASVMRCGKKKVWLDP-NEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEAR 243
           A+V   G ++   +P  EINE ANT +   I +   +G V+ +PV V     V+K   +R
Sbjct: 507 AAVDELGLEEALQEPVPEINETANTTNELTIVQNEMEGFVL-EPVEV-----VQKGKRSR 560

Query: 244 RKGRTV 261
           RK + +
Sbjct: 561 RKRKLI 566


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 163 MIKDGLVIKKPVAVHSRARVRKNTEARRKGRTVALVREEVQPMR 294
           +I D   IK+    HS A      E R   +T+A VRE ++PM+
Sbjct: 864 VIGDVEEIKRRFEKHSEAVRGGEKELRNSNKTMAKVREVMEPMQ 907


>SB_36174| Best HMM Match : Transposase_11 (HMM E-Value=0.00013)
          Length = 427

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 69  GCKPLLQLEGTHPDTVRSNAHKK 1
           GCKP L     HPDT +  A+ +
Sbjct: 336 GCKPFLMTPFPHPDTPKQEAYNE 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,732
Number of Sequences: 59808
Number of extensions: 393284
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)