Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0216.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   116   8e-27
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    37   0.011
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine re...    29   2.9  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    28   5.1  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical...    27   6.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  116 bits (280), Expect = 8e-27
 Identities = 55/101 (54%), Positives = 67/101 (66%)
 Frame = +3

Query: 246 KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 425
           KG H G+GKRRGTANARMP+K LW                AKK+D+HLYH LY++AKGN 
Sbjct: 72  KGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNN 131

Query: 426 FKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
           FKNK+ L+EYI +KK E  R K L    +ARR+  KE+RKR
Sbjct: 132 FKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKR 172



 Score =  113 bits (271), Expect = 1e-25
 Identities = 48/74 (64%), Positives = 65/74 (87%)
 Frame = +1

Query: 34  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 214 ARVRKNTEARRKGR 255
            R R+  EARRKGR
Sbjct: 61  FRAREYEEARRKGR 74


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -3

Query: 345 IFLKPFVFVPIVPSVAYAHWLYLF-SYQSHSATLSTCFCVFADTSAGVYCYRFLDDETIL 169
           IF++PF    IV    +  W   F ++      ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 168 DHLTDVLSGVGVCDLIDFI 112
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 130  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 255
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVR 1096


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 255
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF039042-4|AAC48247.2|  332|Caenorhabditis elegans Serpentine
           receptor, class i protein27 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
 Frame = -3

Query: 384 ACQSSWQFCTSGAIFL-KPFVFVPIVPSVAYAHWLYLFSYQSHSATLSTCFCVFADTSAG 208
           A Q S   C     FL +P    PI    +Y     +FS+ SH   L T F         
Sbjct: 55  AFQISCLICDLNTAFLMQPIGLFPICAGYSYGILSRVFSWSSH--LLMTIFTFLISEQVN 112

Query: 207 VYCYRFLDDETILDHLTDVLSGVGVCDLIDFIWIQPHLLF 88
           +    FL     +  L D+ S     + I  +W    LLF
Sbjct: 113 ILAICFLRKHKAIMSLEDITSS---ANYIYHVWYSFCLLF 149


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 382 LSIFLAVLYFRSNFLKTLCLCTHSSFCGIRALAVP---LLLPKPQCDPFYVLLCFCGHER 212
           LSIFL V  F   F +  C C       + A+ +P   LLL    C  F +   FCG +R
Sbjct: 819 LSIFLLV--FTKFFDRQDCFCWVRPDYIVAAIIIPVTVLLLSTVVCTSFMIYKVFCGMKR 876


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 382 LSIFLAVLYFRSNFLKTLCLCTHSSFCGIRALAVP---LLLPKPQCDPFYVLLCFCGHER 212
           LSIFL V  F   F +  C C       + A+ +P   LLL    C  F +   FCG +R
Sbjct: 801 LSIFLLV--FTKFFDRQDCFCWVRPDYIVAAIIIPVTVLLLSTVVCTSFMIYKVFCGMKR 858


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 382 LSIFLAVLYFRSNFLK 335
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


>AC024214-16|ABA00187.1|  343|Caenorhabditis elegans Hypothetical
           protein Y77E11A.16 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = -3

Query: 369 WQFCTSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSATLSTCFCVFADTSAGVYCYRF 190
           W +C         F+  PI  S  + +W+ +       + +  CFC++    A   C+ F
Sbjct: 103 WAYCVMLHSLFYMFLCFPI--SFGFRYWILIRPAPEQKSCILMCFCLWLVAFAQHICFIF 160

Query: 189 LDDETILDHLTDVL 148
              E+  D +T  L
Sbjct: 161 --SESPPDEITAYL 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,356,700
Number of Sequences: 27780
Number of extensions: 284858
Number of successful extensions: 814
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)