Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0216.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi...   113   6e-26
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi...   112   1e-25
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi...   111   3e-25
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim...    46   2e-05
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p...    28   4.7  
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil...    28   4.7  
At3g26740.1 68416.m03343 light responsive protein-related simila...    28   4.7  
At5g43130.1 68418.m05265 transcription initiation factor IID (TF...    27   6.2  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    27   6.2  
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain...    27   8.3  

>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
           to L19 from several species
          Length = 208

 Score =  113 bits (273), Expect = 6e-26
 Identities = 55/101 (54%), Positives = 65/101 (64%)
 Frame = +3

Query: 246 KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 425
           KG H G+GKR+GT  AR+P K LW                 KKIDRH+YH +YMK KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNV 131

Query: 426 FKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
           FKNKRVLME IH+ KAEKAR K L+   EA+R   K +R+R
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172



 Score =  109 bits (263), Expect = 9e-25
 Identities = 48/74 (64%), Positives = 63/74 (85%)
 Frame = +1

Query: 34  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
           M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 214 ARVRKNTEARRKGR 255
           +R R+   A+RKGR
Sbjct: 61  SRARQLNIAKRKGR 74


>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
           to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
          Length = 209

 Score =  112 bits (270), Expect = 1e-25
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +1

Query: 34  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
           M SLK+QKRLAASVM+CGK KVWLDPNE  +I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 214 ARVRKNTEARRKGR 255
           +R R   EA+RKGR
Sbjct: 61  SRARALNEAKRKGR 74



 Score =  111 bits (268), Expect = 2e-25
 Identities = 55/101 (54%), Positives = 65/101 (64%)
 Frame = +3

Query: 246 KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 425
           KG H G+GKR+GT  AR+P K LW                +KKIDRH+YH +YMK KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNV 131

Query: 426 FKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
           FKNKRVLME IH+ KAEKAR K L    EA+R   K +R+R
Sbjct: 132 FKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172


>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
           to ribosomal protein L19 GI:36127 from [Homo sapiens]
          Length = 214

 Score =  111 bits (267), Expect = 3e-25
 Identities = 53/101 (52%), Positives = 65/101 (64%)
 Frame = +3

Query: 246 KGSHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 425
           KG H G+GKR+GT  AR+P K LW                 KKID+H+YH +YM+ KGNV
Sbjct: 72  KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNV 131

Query: 426 FKNKRVLMEYIHRKKAEKARTKMLNRPGEARRN*VKEARKR 548
           FKNKRVLME IH+ KAEKAR K L+   EA+R   K +R+R
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172



 Score =  110 bits (265), Expect = 5e-25
 Identities = 50/74 (67%), Positives = 61/74 (82%)
 Frame = +1

Query: 34  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
           M SLKLQKRLAASVM+CGK KVWLDPNE ++I+  NSRQNIRK++KDG +I+KP  +HSR
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 214 ARVRKNTEARRKGR 255
           +R RK   A+ KGR
Sbjct: 61  SRARKMKIAKMKGR 74


>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
           similar to 60S ribosomal protein L19-3
           (Swiss-Prot:P49693) [Arabidopsis thaliana]
          Length = 101

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +3

Query: 369 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 479
           KKID+ +Y H ++MK KG V+KNK VLME +H+   E+
Sbjct: 29  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66


>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
           protease, putative similar to cysteine proteinase RD21A
           precursor (thiol protease) GI:435619, SP:P43297 from
           [Arabidopsis thaliana]
          Length = 463

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 194 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 99
           GFL   P +++L M  +     +S+IS+  NH
Sbjct: 2   GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33


>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
           to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
           {Homo sapiens}; contains Pfam profile PF02127:
           Aminopeptidase I zinc metalloprotease (M18)
          Length = 526

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 110 GSNHTFFLPHRITEAASLFCSLRELI 33
           G+N+ F    R+   AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323


>At3g26740.1 68416.m03343 light responsive protein-related similar
           to light regulated protein precursor SP:Q03200 [Oryza
           sativa] (Plant Mol. Biol. 22 (1), 165-170 (1993)), ccr
           protein GB:S52663 [Citrus X paradisi] (Plant Mol. Biol.
           26 (1), 165-173 (1994))
          Length = 141

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 351 GAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHSATLST 241
           GA+F+KP + +P+  SV+     +L  + + ++ LS+
Sbjct: 3   GALFIKPTILLPLPSSVSSPKLTFLLPHATKASRLSS 39


>At5g43130.1 68418.m05265 transcription initiation factor IID
           (TFIID) component TAF4 family protein weak similarity to
           SP|O00268 Transcription initiation factor TFIID 135 kDa
           subunit {Homo sapiens}; contains Pfam profile PF05236:
           Transcription initiation factor TFIID component TAF4
           family
          Length = 712

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 198 SSTLPRSCPQKHRST*KGSHCGFGKRRGTANARMPQKE 311
           SS  P    Q   ST   S    G  +G ANARMP K+
Sbjct: 352 SSVSPSMTTQLDASTTMNSRGPLGTSQGGANARMPPKK 389


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 366 AKKIDRHLYHSLYMKAKGNVFKNKRVL 446
           A K+++ +Y   Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895


>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein weak similarity
            to  ubiquitin-specific protease 12 [Arabidopsis thaliana]
            GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1663

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 524  IAXGLTWSVKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 408
            IA  L  + KHL+P L+SL+P  V H EH L    +  RL
Sbjct: 974  IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,640,560
Number of Sequences: 28952
Number of extensions: 264526
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)