Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0215.Seq
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132...    32   0.37 
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454...    29   2.6  
12_02_0031 - 12477787-12478413,12480182-12480268,12480371-124805...    27   7.9  

>03_01_0164 -
           1326002-1326409,1326410-1326428,1326523-1326647,
           1327482-1327530,1328834-1328855,1328969-1329071
          Length = 241

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 342 CSSLLLYCSVCALLVVYANLIXXSYLLGAIXFC 440
           C S ++YCSVCA + V  + I   YLL  +  C
Sbjct: 92  CLSDMVYCSVCACMQVNIHNIFGDYLLTLLNLC 124


>02_03_0012 -
           13940583-13940853,13942281-13942509,13945275-13945476,
           13945961-13946278,13947321-13947419
          Length = 372

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 315 CXIPHCPHQCSSLLLYCSVCALLVVYANLIXXSYLLGAI 431
           C  P  P+QC  ++LY    ALL + + L+  + + G +
Sbjct: 177 CLFPVYPYQCKIVVLYSCAGALLFIVSILLLRAAIFGIL 215


>12_02_0031 -
           12477787-12478413,12480182-12480268,12480371-12480562,
           12480638-12480766,12480840-12480926,12483076-12483537,
           12485088-12485222
          Length = 572

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 227 LRGMTNGNINFNXPCITLWLCVVLSL*MHLKIVMAVP 117
           L G+T G  N     +TL++C+VL   + + I   VP
Sbjct: 406 LTGLTRGGSNIAYFVVTLYMCIVLVESIMMVIAAVVP 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,226,832
Number of Sequences: 37544
Number of extensions: 178717
Number of successful extensions: 349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)