Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0215.Seq
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 163 TQSHKVMQGLLKLMFPFVIPRSY 231
           ++ HK+ + L   +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536


>Z68118-2|CAA92188.2|  165|Caenorhabditis elegans Hypothetical
           protein R01E6.2 protein.
          Length = 165

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 193 LKLMFPFVIPRSYHHGSRCRC 255
           L L+FPFV+P +Y++G+   C
Sbjct: 8   LALLFPFVLPFNYNNGASAAC 28


>AF106590-2|AAC78237.2|  301|Caenorhabditis elegans Hypothetical
           protein F08B6.3 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 379 FLLFMRT*FXX----HICWEPSXFANFLDSEVEFHFETNLIAQDLM 504
           FL F  T F      H+ WE     +F D E+    E +LIAQD M
Sbjct: 100 FLYFKNTLFSLVDRKHVSWEEYLADSFPDEELHNKEEESLIAQDKM 145


>Z73898-9|CAA98066.2|  913|Caenorhabditis elegans Hypothetical
           protein ZK822.1 protein.
          Length = 913

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 525 RPNIRHGHEILSNQIRLKMKFYLXIQ 448
           RP+  HGH +    IR  + FYL ++
Sbjct: 560 RPSSFHGHSVSERNIRQDLSFYLPLK 585


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,129,921
Number of Sequences: 27780
Number of extensions: 171950
Number of successful extensions: 384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)