Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0215.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    29   0.025
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    29   0.025
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    29   0.025
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.93 

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 HQCSSLLLYCSVCALLVVYANLI 404
           H CSS   Y  +C LL++ ANLI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLI 104


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 HQCSSLLLYCSVCALLVVYANLI 404
           H CSS   Y  +C LL++ ANLI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLI 104


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 HQCSSLLLYCSVCALLVVYANLI 404
           H CSS   Y  +C LL++ ANLI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLI 104


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 490 QSDSSQNEILPXNPKSSQKXMAP 422
           +S  S  +ILP NPK   K  AP
Sbjct: 1   ESSLSLKDILPLNPKLYDKHRAP 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,831
Number of Sequences: 438
Number of extensions: 2066
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)