Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0214.Seq
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 101 6e-23
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 101 6e-23
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.6
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 2.9
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.8
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 6.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 24 8.7
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 101 bits (241), Expect = 6e-23
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +3
Query: 63 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +2
Query: 257 DNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGYGGRR 409
D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q + R+
Sbjct: 82 DQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQERFRRRQ 131
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 101 bits (241), Expect = 6e-23
Identities = 47/64 (73%), Positives = 54/64 (84%)
Frame = +3
Query: 63 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
Score = 47.2 bits (107), Expect = 1e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 257 DNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 355
D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 82 DQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 151 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 41
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 1.6
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 99 DTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERVTTMSQKC 278
D K + ++I II K L++ +A +TH + L+H+Q S++ E + T
Sbjct: 145 DKEKEVEKKITII--KDLKDALAS-STHQVLELQHTQQEKASLQTNYEFELQKLTQKNSI 201
Query: 279 LLSNMT 296
L +N T
Sbjct: 202 LENNNT 207
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 204 SQVRGISIKLQEEERERVTTMSQKCLLSNM 293
S V ISIK QEEER+R + ++ S +
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 169 PAILFLRGLVGMIAISSHILLFVSK 95
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 123 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 215
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 189 RRLRHSQVRGISIKLQEEERERVTTMSQKCLLSNMTS 299
R+ S+ R S KL EEER+R T + L + +TS
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQ-LANRLTS 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,410
Number of Sequences: 5004
Number of extensions: 30894
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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