Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0214.Seq
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0066 - 537729-538163 104 3e-23
10_07_0174 + 13815478-13815903 104 3e-23
12_02_0349 - 17820352-17821238,17822976-17823363 30 0.69
05_05_0301 + 23936126-23936267,23937101-23937174,23937338-239374... 29 1.6
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 28 3.7
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150... 27 6.4
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 27 8.5
03_06_0659 - 35345095-35345135,35345982-35347365 27 8.5
>03_01_0066 - 537729-538163
Length = 144
Score = 104 bits (250), Expect = 3e-23
Identities = 45/64 (70%), Positives = 58/64 (90%)
Frame = +3
Query: 63 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
Score = 33.1 bits (72), Expect = 0.098
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 260 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 379
++VP+ SALE D I VD +T DML L ++ G+ + QP
Sbjct: 83 DFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121
>10_07_0174 + 13815478-13815903
Length = 141
Score = 104 bits (249), Expect = 3e-23
Identities = 45/64 (70%), Positives = 57/64 (89%)
Frame = +3
Query: 63 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++ VRGIS+KLQEE
Sbjct: 17 IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
Score = 33.9 bits (74), Expect = 0.056
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 260 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGY 397
++VPE SALE + I VD +T +ML L ++ G++ Q + Y
Sbjct: 83 DFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128
>12_02_0349 - 17820352-17821238,17822976-17823363
Length = 424
Score = 30.3 bits (65), Expect = 0.69
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 188 EASQTLASARNLYQTSGRGA*EGDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQ 367
EA+ T A+A + + +G G G+NY V L + PD ++LK+ N G +
Sbjct: 294 EAAATAAAATD-HDAAGDGG-GGNNYQSLVDFLPGSVFSSSPDLANLLKLYTEGNGGGRR 351
Query: 368 LT 373
LT
Sbjct: 352 LT 353
>05_05_0301 +
23936126-23936267,23937101-23937174,23937338-23937421,
23937502-23937582,23938304-23938384,23938503-23938595,
23939094-23939270,23939838-23939927,23940859-23940925,
23941218-23941309
Length = 326
Score = 29.1 bits (62), Expect = 1.6
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 176 HTFNEASQTLASARNLYQTSGRGA*EGDNYVPEVSALEH 292
H F + S+ A NL+ G+G E + VPE+SALEH
Sbjct: 206 HGFLDVSKV---AGNLHFAPGKGFYESNINVPELSALEH 241
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 278 TLLGHSCHPLTLLFLKFDRDS 216
T+LG+SCH TLL+L+ + S
Sbjct: 927 TVLGNSCHGTTLLYLRSQKAS 947
>04_04_0448 -
25314042-25314183,25314271-25314321,25314437-25315033,
25315151-25315353
Length = 330
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 360 PLILLKSSIFNISLVSGSTSMMSCSRADTSGT*L-SPSHAPLPEV 229
PL+ L+ + N S VSGS S +C S SPS AP EV
Sbjct: 23 PLLFLRPASCNPSAVSGSCSSGACRGVRCSAANKPSPSTAPGTEV 67
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 314 DTKDMLKMLDFNNINGLQLTQPATQ 388
DTKDMLK +D+ + G +T +Q
Sbjct: 597 DTKDMLKNVDWKTVGGGSVTTDPSQ 621
>03_06_0659 - 35345095-35345135,35345982-35347365
Length = 474
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 361 PATNTASYPGWLW 399
PATN A YPG LW
Sbjct: 370 PATNDAPYPGKLW 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,538,112
Number of Sequences: 37544
Number of extensions: 191951
Number of successful extensions: 520
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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