Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0214.Seq
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36903| Best HMM Match : p450 (HMM E-Value=0)                        29   2.2  
SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)                     28   3.8  
SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)           27   6.6  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)         27   8.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_36903| Best HMM Match : p450 (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 141 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERVTTMSQKCLLSN 290
           T   ++ +AGF T+L  +L+    R   + +QE + E +T   +  L SN
Sbjct: 480 TNAAQDDVAGFVTNLCLKLKVEDTRVCKLVIQEFKGEVLTVFDEFFLSSN 529


>SB_7882| Best HMM Match : DUF548 (HMM E-Value=3.3)
          Length = 428

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 193 VSDTR--KCEESLSNFRKRSVRG*QLCPRSVC 282
           V+D R  +CE  LS+ RKR+ R  +L P  VC
Sbjct: 395 VTDLRIARCEARLSHLRKRTQRARRLPPLHVC 426


>SB_44491| Best HMM Match : Lipase_GDSL (HMM E-Value=4.5e-05)
          Length = 720

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 135 IPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERVTTMSQKCLLSNMTSSK*TP 314
           +  KPL      +   L+ ++  S V  +   +Q+E+ ++VTT + K   +  + +K TP
Sbjct: 262 VSKKPLDISSPEYMQKLLAKILPSVVNSVKADMQQEKSDQVTT-TPKPSTTTTSPTKTTP 320

Query: 315 T 317
           T
Sbjct: 321 T 321


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 72  YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 161
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
          Length = 1084

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 269 PEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 364
           PE+S + H I    PD +D   +L+F+NI G+
Sbjct: 112 PEISKMLHHIY---PDLEDHESVLNFDNIKGV 140


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 94  ILIQIKEYVKKSLSFLPSLLGIKLLDL 174
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,094,386
Number of Sequences: 59808
Number of extensions: 213484
Number of successful extensions: 482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)