Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0214.Seq
(429 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 106 8e-24
U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/reti... 29 1.4
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 4.3
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 27 5.7
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 27 5.7
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 26 10.0
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 26 10.0
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 26 10.0
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 106 bits (254), Expect = 8e-24
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = +3
Query: 63 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 242
IEKYYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR+ VRGISIKLQEE
Sbjct: 17 IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76
Query: 243 ERER 254
ERER
Sbjct: 77 ERER 80
Score = 35.1 bits (77), Expect = 0.022
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = +2
Query: 257 DNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 349
DNY+PE+S ++ I+VD DT DMLK FN
Sbjct: 82 DNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>U00052-7|AAK21422.2| 232|Caenorhabditis elegans Fatty acid/retinol
binding proteinprotein 8 protein.
Length = 232
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 167 WICHTFNEASQTLASARNLYQTSGRGA*EGDNYVPEVSALEHDIIEVDPDTKDMLKMLD 343
W CH FN A ++ A+ L Q A + + V L E + LK LD
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAAKIEEAFPEAVKLLNSKKFEAYSIIVNNLKPLD 208
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 324 SLVSGSTSMMSCSRADTSGT*LSPSHAPLPEV 229
S SGST + + A TSG+ L+ + AP P V
Sbjct: 614 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 645
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -1
Query: 324 SLVSGSTSMMSCSRADTSGT*LSPSHAPLPEV 229
S SGST + + A TSG+ L+ + AP P V
Sbjct: 821 STSSGSTVTVGSTEASTSGSSLATTSAPKPSV 852
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +2
Query: 317 TKDMLKMLDFNNINGLQL 370
T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 96 FDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERVTTMSQK 275
F NK+ CE +A++ K L H+ + R + L + + ER+ + ++
Sbjct: 409 FCPNKKNCENVAVLIAKTL-------PAHIRQAKRAESDAFLQSYLSDNDDERMDAVLKQ 461
Query: 276 CLLSNM 293
C+LS +
Sbjct: 462 CILSGV 467
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +3
Query: 174 ATHLMRRLRHSQVRGISIKLQEEERERVTTMSQ 272
ATH+ + +HS ++ + ++ EE++R+ T+++
Sbjct: 354 ATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNR 386
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +3
Query: 174 ATHLMRRLRHSQVRGISIKLQEEERERVTTMSQ 272
ATH+ + +HS ++ + ++ EE++R+ T+++
Sbjct: 354 ATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNR 386
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = +3
Query: 174 ATHLMRRLRHSQVRGISIKLQEEERERVTTMSQ 272
ATH+ + +HS ++ + ++ EE++R+ T+++
Sbjct: 348 ATHVNKPNKHSVLQSLKAYIRAEEKDRMHTLNR 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,834
Number of Sequences: 27780
Number of extensions: 167861
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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