Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0214.Seq
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   1.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 358 WPATNTASYPGWLWWQA 408
           W  ++  S+P  +WW+A
Sbjct: 171 WICSSAISFPAIVWWRA 187


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 372 VSCRPLILLKSSIFNISLVSGSTSMMSCSRADTSGT 265
           ++C  + L  SS+  I+L  G ++ +S +R   +GT
Sbjct: 215 INCTYVALYPSSVQVIALGVGVSNFLSSTRTAETGT 250



 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 350 NINGLQLTQPATQGGYGGRRN 412
           N+    LT+P T   YG R N
Sbjct: 196 NVLATSLTEPYTLRNYGRRIN 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,308
Number of Sequences: 438
Number of extensions: 2094
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)