Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0213.Seq
         (439 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    44   0.002
UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family wit...    33   2.0  
UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;...    33   2.0  
UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1; Syn...    32   6.2  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 305  NRLLHKPGQGKICLCFE 255
            NRLLHKPGQGKICLCFE
Sbjct: 1155 NRLLHKPGQGKICLCFE 1171



 Score = 37.1 bits (82), Expect = 0.16
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = -2

Query: 255  NIFDIPYHLRKNIGV 211
            NIFDIPYHLRKNIGV
Sbjct: 1172 NIFDIPYHLRKNIGV 1186


>UniRef50_UPI00015609DE Cluster: PREDICTED: similar to family with
           sequence similarity 48, member A; n=2; Equus
           caballus|Rep: PREDICTED: similar to family with sequence
           similarity 48, member A - Equus caballus
          Length = 953

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 436 PIPPQARPGQAQPLQAVLLPRAV-QVHRTLPPLRLVFPGVII 314
           P+P   RPGQ+ PLQ V L  A+ Q+ + +  LR++ P V +
Sbjct: 707 PVPALQRPGQSLPLQRVQLSSALQQLQQQIQHLRILQPPVAV 748


>UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;
           n=1; Chlorella virus AR158|Rep: Putative uncharacterized
           protein c530R - Chlorella virus AR158
          Length = 79

 Score = 33.5 bits (73), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 438 HRFHLKHVRGKXNHFRQFFYLGRFKYIGRFLHF 340
           H  H +H R    HFR F + G F++ G F HF
Sbjct: 13  HFRHFRHFR-HFRHFRHFRHFGHFRHFGHFGHF 44



 Score = 31.9 bits (69), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 438 HRFHLKHVRGKXNHFRQFFYLGRFKYIGRFLHF 340
           H  H +H R    HFR F + G F + G F HF
Sbjct: 22  HFRHFRHFR-HFGHFRHFGHFGHFGHFGHFGHF 53


>UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1;
           Syntrophus aciditrophicus SB|Rep: Hypothetical exported
           protein - Syntrophus aciditrophicus (strain SB)
          Length = 394

 Score = 31.9 bits (69), Expect = 6.2
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -1

Query: 430 PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVF 329
           PPQ +P Q QP Q    PR +Q   TLP  R VF
Sbjct: 269 PPQVQPQQGQPRQQ---PRQLQPQHTLPQSREVF 299


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,052,710
Number of Sequences: 1657284
Number of extensions: 7043672
Number of successful extensions: 14869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14851
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)