Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0213.Seq
         (439 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   0.55 
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   0.55 
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   0.55 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.8  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    20   9.0  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    20   9.0  

>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 299 LLHKPGQGKICLCFETYSIFLTISVRISVFNTTKHDLEYSL 177
           LL K G       + TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 299 LLHKPGQGKICLCFETYSIFLTISVRISVFNTTKHDLEYSL 177
           LL K G       + TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -3

Query: 299 LLHKPGQGKICLCFETYSIFLTISVRISVFNTTKHDLEYSL 177
           LL K G       + TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 28  VYYLGNTITFFFFPV 72
           V++LG+ + FF FP+
Sbjct: 236 VFFLGSILIFFIFPL 250


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 163 NLKHYKEYSKSCLVVLNTDILTEMVRNI 246
           N+K  K   + C + +N   L E  RN+
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNV 745


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 HRYSYGDGKEYRIC 254
           H +SY  G +Y IC
Sbjct: 148 HGFSYKCGIQYHIC 161


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 213 HRYSYGDGKEYRIC 254
           H +SY  G +Y IC
Sbjct: 144 HGFSYKCGIQYHIC 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,668
Number of Sequences: 336
Number of extensions: 1863
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)