Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0213.Seq
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903...    27   5.0  
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    27   8.7  

>02_05_0885 -
           32488750-32489145,32489372-32490040,32490245-32490301,
           32490814-32491152
          Length = 486

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 330 FQESSFRREQTFTQAWSRKNMPLLRNIFDI 241
           FQ++SFR E+  TQ    ++  LLR + D+
Sbjct: 290 FQKASFREEKFRTQMEDTRHAELLRRLIDL 319


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 430 PPQARPGQAQPLQAVLLPRAVQVHRTLPP 344
           PPQ +P Q Q LQ   LP+ +Q    LPP
Sbjct: 214 PPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,030,403
Number of Sequences: 37544
Number of extensions: 186762
Number of successful extensions: 372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)