Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0211.Seq
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.11 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.11 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.4  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   3.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   3.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 270 REAVTWACGHHRVPRETSRLLRHCAHQGLHGTHLRHEV 157
           RE +TW    H   R  +R  R C H    GT +R  +
Sbjct: 593 REQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 630


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 270 REAVTWACGHHRVPRETSRLLRHCAHQGLHGTHLRHEV 157
           RE +TW    H   R  +R  R C H    GT +R  +
Sbjct: 485 REQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 522


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 237 DGAHTPKLRPP 269
           DGA TP +RPP
Sbjct: 65  DGASTPDVRPP 75


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 192 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 85
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 379 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 414



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 368 PTYQSQRFHPVRHRNYEDYGLHQ 300
           P  Q Q ++   H N E+Y  HQ
Sbjct: 353 PNPQQQYYYNKNHPNSENYINHQ 375


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 237 DGAHTPKLRPP 269
           DGA TP +RPP
Sbjct: 221 DGASTPDVRPP 231


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -2

Query: 192 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 85
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 327 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 362



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 368 PTYQSQRFHPVRHRNYEDYGLHQ 300
           P  Q Q ++   H N E+Y  HQ
Sbjct: 301 PNPQQQYYYNKNHPNSENYINHQ 323


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 273 IIHKFPDSNLMKSIIFVVAMSNWMESL 353
           II +F    L   +  VV +SNW E L
Sbjct: 239 IIARFNIERLCNGLKRVVKLSNWREPL 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 102 RQGHPPHHRRG 70
           RQG PPHH  G
Sbjct: 57  RQGIPPHHYGG 67


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 335 RHRNYEDYGLHQV*VWELVYDHGRP*LG 252
           R+  Y D     V +WE+V   G P +G
Sbjct: 670 RYTTYSDVWSFGVLLWEIVTLGGTPYVG 697


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,260
Number of Sequences: 336
Number of extensions: 3242
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)