Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0211.Seq
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 107 8e-25
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 107 1e-24
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 105 3e-24
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 30 0.27
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.36
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.5
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 3.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 4.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 5.9
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 7.7
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.7
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 7.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.7
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 107 bits (258), Expect = 8e-25
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Frame = -3
Query: 563 GFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTSCVKSSVCD---RT*ECSVLGNA 396
GFMDV+S+EKT + + GRFT+HRIT E K + V +
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 395 *WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHP 216
+P P + E + +++ GR +GRVGTIV RE H
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSA-QVMVTGGRN-MGRVGTIVHREHHL 202
Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
Score = 92.3 bits (219), Expect = 5e-20
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 468 EAKYKLCKVKRVR 430
EAKYKLCKVKRV+
Sbjct: 118 EAKYKLCKVKRVQ 130
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 107 bits (256), Expect = 1e-24
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Frame = -3
Query: 563 GFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTSCVKSSVCD---RT*ECSVLGNA 396
GFMDV+S+EKT + + GRFT+HRIT E K + V +
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 395 *WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHP 216
+P P + E + +++ GR +GRVGTIV RE H
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSA-QVMVTGGRN-MGRVGTIVHREHHL 202
Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
Score = 92.3 bits (219), Expect = 5e-20
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 468 EAKYKLCKVKRVR 430
EAKYKLCKVKRV+
Sbjct: 118 EAKYKLCKVKRVQ 130
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 105 bits (253), Expect = 3e-24
Identities = 68/177 (38%), Positives = 97/177 (54%), Gaps = 4/177 (2%)
Frame = -3
Query: 563 GFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTSCVKSSVCD---RT*ECSVLGNA 396
GFMDV+S++KT + + GRFT+HRIT E K + V +
Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 395 *WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHP 216
+P P + E + +++ GR +GRVGTIV RE H
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSA-QVMVTGGRN-MGRVGTIVHREHHL 202
Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 203 GSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
Score = 92.3 bits (219), Expect = 5e-20
Identities = 40/59 (67%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+G
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMG 190
Score = 29.5 bits (63), Expect = 0.36
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = -2
Query: 468 EAKYKLCKVKRVR 430
EAKYKLCKVKRV+
Sbjct: 118 EAKYKLCKVKRVQ 130
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 29.9 bits (64), Expect = 0.27
Identities = 22/88 (25%), Positives = 36/88 (40%)
Frame = -1
Query: 568 LLDLWMLSQLRRLMTVXSNLDVKADSQSTVSPLRG*VQVV*SQACATGPKNVPYLVTHDG 389
L++ W QL M + S + S P+RG Q + + V G
Sbjct: 300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 388 RTIRYPDPLIKVNDSIQLDIATTKIMDF 305
RT+ PDP +++ D + + KI+ F
Sbjct: 360 RTVISPDPNLRI-DQVAVPYRIAKILTF 386
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.36
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +3
Query: 114 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 239
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 265 GRNLGVWAPSCPARDIPAPSTLCTSRTPRDTPSP 164
G N+G + P IP T + P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 2.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 359 QSQRFHPVRHRNYED 315
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 392 WPHHPLPRPTYQSQR 348
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 218 DVSRGTRWCPHAQVTASRDHTQVPRLKLDEVHNLRSC 328
D+++ TRW P + +D +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP-MDIQGLQD---IPRPLRDKVHILRDC 1233
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.4
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Frame = -1
Query: 511 LDVKADSQSTVSPLRG*VQVV*SQACATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 332
LD+K + SP R + +V ++ + L + G+ + V++++ L
Sbjct: 325 LDIKVGRANASSPRRKSISIVKPHGISSPKHSTNNLSSKSGK---FHSDFRVVSENVLLQ 381
Query: 331 IATTKIMDFIKFESGNLCMITGGRNLGVWAPSCPARDIPAPSTLCTSRTPR--DTPS--P 164
+ I+ + N + P+ P P P +S TPR D PS P
Sbjct: 382 ARSETNSPIIENKEANNFLAPTSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSLPP 441
Query: 163 RG 158
RG
Sbjct: 442 RG 443
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 389 PHHPLPRPTYQSQRFHPVRHRNYEDY 312
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 120 RLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPKLRPPV 272
RL +AD + + RG+G+ + + G+G L +D H + P+
Sbjct: 284 RLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVHRVIMNVPL 334
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 364 LIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGVWAPSCPAR 224
L K N +++L++ + ++ IK + + + G WA PAR
Sbjct: 184 LKKNNSTLELEVRLQRFIELIKSKKLCQAIAFAKAHFGTWANEHPAR 230
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 245 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 150
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 386 HHPLPRPTYQSQRFHPVR 333
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,119
Number of Sequences: 5004
Number of extensions: 48232
Number of successful extensions: 141
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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