Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0211.Seq
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 100 2e-21
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 99 2e-21
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 98 5e-21
04_04_0040 + 22322839-22324173 33 0.16
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 0.64
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 30 1.1
12_02_0735 - 22636835-22639502,22639755-22640734 29 2.0
12_02_0759 - 22882435-22882731 29 2.6
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 2.6
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 29 3.4
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 3.4
08_01_0220 - 1751367-1752854 28 4.5
06_01_0918 + 7083570-7083705,7083977-7084008 28 4.5
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 4.5
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 6.0
04_04_0946 - 29579779-29580004,29580098-29580210 27 7.9
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 27 7.9
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 99.5 bits (237), Expect = 2e-21
Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDV+SI KT + + GRF + + E C SV L
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P ++ + + + V +V G GRVG I +RE+H G
Sbjct: 144 GRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKG 203
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 48
SF+ +H++D+ GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 204 SFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
Score = 95.9 bits (228), Expect = 2e-20
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN G
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTG 190
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 99.1 bits (236), Expect = 2e-21
Identities = 66/175 (37%), Positives = 90/175 (51%), Gaps = 2/175 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDV+SI KT + + GRF + + E C SV L
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P ++ + + + V +V G GRVG I +RE+H G
Sbjct: 144 GRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKG 203
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAA 48
SF+ +H++D+ GH FATRL NVF IGKG K ++SLP+GKGI+L+I EE+ KR AA
Sbjct: 204 SFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
Score = 95.1 bits (226), Expect = 3e-20
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN G
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTG 190
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 97.9 bits (233), Expect = 5e-21
Identities = 67/174 (38%), Positives = 88/174 (50%), Gaps = 2/174 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDVVSI KT + + GRF +H I E C SV L
Sbjct: 100 AGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTND 159
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P ++ + + + V +V G GRVG I SRE+H G
Sbjct: 160 GRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKG 219
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIA 51
SF+ +H++D+ GH FATR+ NVF IGK K ++SLP+GKGI+L+I EE KR A
Sbjct: 220 SFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSIIEEARKRNA 273
Score = 94.3 bits (224), Expect = 6e-20
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN G
Sbjct: 148 GQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTG 206
>04_04_0040 + 22322839-22324173
Length = 444
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -2
Query: 222 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 64
TSRL LR H H HG + RH++ +R R H L A G P + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 31.1 bits (67), Expect = 0.64
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = -2
Query: 231 PRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG--HPPHHRRGAGQA 58
P +RL RH G HG R + E + GH H G P HH RG GQA
Sbjct: 15 PEAHARLPRHAPPAGGHGRGGRGQ-EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQA 73
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -2
Query: 240 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 61
H R + H H G H H +H E +L +++ GH P+ R A Q
Sbjct: 313 HMYVRPSPNQDEHHGHTGHHIRHFLQLGWDYLHLTYKQEAANLGSSQNGHFPYRWRRASQ 372
Query: 60 AHRS 49
H +
Sbjct: 373 YHEA 376
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 177 THLRHEVEQRVHNRQGHEGVH-LAAARQGHPPHHRRGAGQAHRSQG 43
TH RH + +R R+G G L A R P H G G+ R +G
Sbjct: 42 THERHHLVERGQRRRGDRGAGVLGADRVEEGPQH--GGGERRRGRG 85
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 194 CAQCRRSRDVSRGTRWCPHAQVTASRDHTQ-VPRLKLDE 307
C C+R D S G C H Q++A+ +H+ +P LD+
Sbjct: 5 CDCCKRYVDHSNGKMKCFHRQMSANFEHSMIIPNKFLDQ 43
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 244 APSCPARDI--PAPSTLCTSRTPRDTPSP 164
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>08_01_0220 - 1751367-1752854
Length = 495
Score = 28.3 bits (60), Expect = 4.5
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = -1
Query: 406 LVTHDGRTIRYPDPLIKVNDSIQLD----IATTKIM-DFIKFESGNLCMITGGRNLGVWA 242
L+ HDGR + PDPL + ++ L +A T+I+ F+ + G L G +
Sbjct: 223 LIFHDGRLVGRPDPLACLAVALWLPLGAALAVTRILIAFLPYSVGLLLAAATGFQIRAHL 282
Query: 241 PSCPARDIPAPSTLCTSRTPRD 176
P R C RT D
Sbjct: 283 GGAPPRWRGGTLYACNHRTLLD 304
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 271 TGGRNLGVWAPSCPARDIPAPSTLCTSRT-PRDTP 170
T R G+W PS A + AP++ S T PR TP
Sbjct: 4 TRRRPCGLWRPSAHAAALRAPASSVLSTTPPRQTP 38
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 108 AARQGHPPHHRRGAG 64
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 400 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 266
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -2
Query: 162 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 31
EV++ H R+ H + R+ H HH + Q R A+
Sbjct: 54 EVDRAKHRRKKRAAAHAVSVRKEHRNHHHHHRHHHQQPQPRPAI 97
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +2
Query: 164 WRRCVPWSP*CAQCRRSRDVSRGTRWCPHAQVTASRDHTQVPRLKLDEVH 313
WRR + W+ C R+ D R W VT+S + RL D H
Sbjct: 57 WRRALTWNMDGGGCGRAGDDLRRGPWMMPPPVTSSDVRRERNRLIPDRFH 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,295
Number of Sequences: 37544
Number of extensions: 418696
Number of successful extensions: 1467
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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