Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0211.Seq
(568 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 2e-30
SB_59481| Best HMM Match : Exc (HMM E-Value=5.1) 29 2.6
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 4.6
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 28 6.1
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 8.1
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 128 bits (310), Expect = 2e-30
Identities = 78/178 (43%), Positives = 102/178 (57%), Gaps = 4/178 (2%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTSCVKSSVCD---RT*ECSVLGN 399
AGFMDVV+I+KT + + GRF +HRIT E + D + V +
Sbjct: 508 AGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHD 567
Query: 398 A*WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERH 219
A +P P ++ DY +V GR +GRVG + RE+H
Sbjct: 568 ARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVG-GRN-MGRVGMVTHREKH 625
Query: 218 PGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+IAEERD+RIA K
Sbjct: 626 AGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSIAEERDRRIAEK 683
Score = 95.1 bits (226), Expect = 4e-20
Identities = 38/59 (64%), Positives = 50/59 (84%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN+G
Sbjct: 556 GAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMG 614
>SB_59481| Best HMM Match : Exc (HMM E-Value=5.1)
Length = 265
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = -3
Query: 566 AGFMDVVSIEKTNDCXV*S-----RC*GRFTIHRITPERLSTSCVKSSV 435
A D IEK N C V RC GRFT R S CVKS+V
Sbjct: 77 AAATDRQGIEKWNICVVVKTPSNRRCVGRFTFLHEMKRRHSDDCVKSTV 125
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 156 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 64
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 155 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 42
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 155 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 42
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -2
Query: 249 CGH-HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 76
C H H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 18 CSHTHTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -2
Query: 150 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 52
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -2
Query: 243 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 73
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 280 CMITGGRNLGVWAPSCPARDIPAPSTLCT 194
C T G+ G+ CPA+D A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 177 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 49
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 55 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 216
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 490 QSTVSPLRG*VQVV*SQACATGPKNVPYLVTHD 392
Q+ + PL + + + A G N+PYL THD
Sbjct: 7 QTDLLPLMQCIWITENSIVAAGHNNMPYLFTHD 39
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -2
Query: 207 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 79
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,232,846
Number of Sequences: 59808
Number of extensions: 450420
Number of successful extensions: 1495
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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