Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0211.Seq
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.53 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.93 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.93 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 226 RDIPAPSTLCTSRTPRDTPSP 164
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = -2

Query: 195  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 64
            H G  G  + H      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -2

Query: 195 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 79
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 226 RDIPAPSTLCTSRTPRDTPSP 164
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 171 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 37
           ++ E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 192 DVHNVEGAGMSLAGHD 239
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 102
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 215 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 102
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 373 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
           PD L  +     LD+   +I +F      NL  +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,973
Number of Sequences: 438
Number of extensions: 3991
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)