Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0211.Seq
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 110 7e-25
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 110 7e-25
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 109 1e-24
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 33 0.13
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 30 1.2
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 1.6
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 2.2
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 2.2
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 2.9
At2g05090.1 68415.m00534 hypothetical protein includes At5g37080... 28 3.8
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 28 5.0
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 5.0
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 5.0
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 6.6
At3g63100.1 68416.m07087 glycine-rich protein 27 6.6
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 110 bits (264), Expect = 7e-25
Identities = 72/176 (40%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDVVSI KTN+ + GRF +H I E C S+ L
Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P + + + + V +V G GRVG I +RE+H G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
SF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 204 SFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
Score = 91.5 bits (217), Expect = 4e-19
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN G
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRG 190
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 110 bits (264), Expect = 7e-25
Identities = 72/176 (40%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDVVSI KTN+ + GRF +H I E C S+ L
Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P + + + + V +V G GRVG I +RE+H G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
SF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE KR++A+
Sbjct: 204 SFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSAQ 259
Score = 91.5 bits (217), Expect = 4e-19
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN G
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRG 190
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 109 bits (262), Expect = 1e-24
Identities = 72/176 (40%), Positives = 94/176 (53%), Gaps = 2/176 (1%)
Frame = -3
Query: 566 AGFMDVVSIEKTND-CXV*SRC*GRFTIHRITPERLSTS-CVKSSVCDRT*ECSVLGNA* 393
AGFMDVVSI KTN+ + GRF +H I E C S+ L
Sbjct: 84 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYD 143
Query: 392 WPHHPLPRPTYQSQRFHPVRHRNYEDYGLHQV*VWELVYDHGRP*LGRVGTIVSRERHPG 213
P P + + + + V +V G GRVG I +RE+H G
Sbjct: 144 GRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKG 203
Query: 212 SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 45
SF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI EE KR+A++
Sbjct: 204 SFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQ 259
Score = 91.9 bits (218), Expect = 3e-19
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 251
G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+ GN+ M+TGGRN G
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRG 190
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 195 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 52
HQG+HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 195 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 52
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 195 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 55
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -2
Query: 195 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 31
HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGM 216
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 195 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 40
HQG HG ++H Q +H Q H+G H + GH H+ G H+ R
Sbjct: 194 HQGGHG--MQH---QDMHGMQ-HQGRHGMQHQGGHEMQHQGMHGMQHQGGHR 239
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 439 ACATGPKNVPYL---VTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 284
AC G +NVP + HD LIK+ DS+ + +++D IK +GN
Sbjct: 443 ACEDGGENVPSSRGPILHDTTPSSDSRLLIKLRDSLPAWVTEEQMLDLIKKHAGN 497
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 99 QGHPPHHRRGAGQAHRSQG 43
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At2g05090.1 68415.m00534 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 572
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 361 IKVNDS-IQLDIATTKIMDFIKFESGNLCMITGGRNLGVW 245
+ + DS + DI TK +DF + + + + GR++G W
Sbjct: 249 LTIQDSYVNRDIIKTKSVDFFDYPAKTIVDLLNGRDVGQW 288
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = -1
Query: 427 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGV 248
GPK + + + G+T+R P I+ + D +T + + + R V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165
Query: 247 W-APSCPARDIPAPSTLCTSRTPRDTPSPR 161
P P +P+ T+ P D+ SP+
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPK 195
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 130 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 225
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 397 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 266
H+ + +P ++N+ I+LDI++ I F NL +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -3
Query: 224 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 108
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 6.6
Identities = 23/70 (32%), Positives = 25/70 (35%)
Frame = -2
Query: 249 CGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 70
CG R + R HC H HG H H GH+ H GH H G
Sbjct: 57 CGGRR--HDYGRDCCHCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHG 101
Query: 69 AGQAHRSQGR 40
G HR GR
Sbjct: 102 HGHGHRRHGR 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,909,299
Number of Sequences: 28952
Number of extensions: 284993
Number of successful extensions: 883
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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