Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0210.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    26   2.7  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   3.6  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
 Frame = +3

Query: 210 TLTPKLFFIVKLI-----VSNLASDLSKGPSFWASMMLP 311
           T+T  LF +  L+     VSNL + + KGP F+ SM  P
Sbjct: 228 TITSGLFGLPTLVLNVETVSNLPAIIKKGPKFFISMGRP 266


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 222 KLFFIVKLIVSNLASDLSKGPSFWASMMLPAXLSFPFMYAT*GLRAPDA 368
           K+  +  ++V+N A  L++G      M+L   ++FP +     LR P+A
Sbjct: 123 KVMGVEVMVVTNAAGGLNQGFKVGDLMILKDHINFPGLAGMNPLRGPNA 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,934
Number of Sequences: 5004
Number of extensions: 33710
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)