Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0210.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0268 + 14436631-14436756,14436866-14436929,14437001-144371...    57   7e-09
02_05_0855 - 32271631-32271712,32271823-32271922,32272012-322720...    56   2e-08
06_01_0762 + 5699619-5699744,5699831-5699891,5699979-5700078,570...    41   6e-04
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207...    27   8.4  

>01_03_0268 +
           14436631-14436756,14436866-14436929,14437001-14437100,
           14437187-14437478
          Length = 193

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 26/64 (40%), Positives = 38/64 (59%)
 Frame = -1

Query: 427 PKSGKADTTYAIADADLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGPLLKSDAKFET 248
           P  GK D T++  D D + I+SG LNPQ+ ++ GKL I G+I  AQK  P +      +T
Sbjct: 65  PYEGKPDATFSFTDDDFLAISSGKLNPQMVFIMGKLKIKGSISAAQKFTPDIDLPQAIQT 124

Query: 247 INLT 236
           + L+
Sbjct: 125 VGLS 128


>02_05_0855 -
           32271631-32271712,32271823-32271922,32272012-32272072,
           32272169-32272294
          Length = 122

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 25/50 (50%), Positives = 33/50 (66%)
 Frame = -1

Query: 427 PKSGKADTTYAIADADLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGP 278
           P  GK D T++  D D + I+SG LNPQ+A++ GKL I G+I  AQK  P
Sbjct: 64  PYEGKPDATFSFTDDDFLAISSGKLNPQMAFIMGKLKIKGSISAAQKFTP 113


>06_01_0762 +
           5699619-5699744,5699831-5699891,5699979-5700078,
           5700436-5700560,5700631-5700706,5701122-5701164
          Length = 176

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = -1

Query: 427 PKSGKADTTYAIADADLVQIASGALNPQVAYMK 329
           P  GK D T++  D+D + IA+G +NPQ+A+++
Sbjct: 64  PYEGKPDATFSFTDSDFLSIATGKMNPQIAFIR 96


>02_01_0311 -
           2075881-2076165,2076450-2076519,2076628-2076691,
           2076798-2076837,2076930-2077006,2077095-2077311,
           2077482-2078132
          Length = 467

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 457 PQVPSCSRRRPKSGKADTTYAIADADL 377
           PQ P C +++  +G++ ++  + DADL
Sbjct: 129 PQPPKCEQQQNSAGQSSSSLMLLDADL 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,258
Number of Sequences: 37544
Number of extensions: 185431
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)