Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0210.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              69   3e-12
SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)                   41   5e-04
SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   5e-04
SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)            30   0.92 
SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)                 28   4.9  
SB_46504| Best HMM Match : DUF1373 (HMM E-Value=7.5)                   27   6.5  
SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)              27   8.6  

>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 32/57 (56%), Positives = 37/57 (64%)
 Frame = -1

Query: 427 PKSGKADTTYAIADADLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGPLLKSDAK 257
           PK GK DTT    D DL+ +A+G  NPQ  +MKGKL +AGNIML  KL  L K  AK
Sbjct: 660 PKGGKPDTTITCEDEDLISMATGKANPQQLFMKGKLKVAGNIMLTMKLNQLFKDYAK 716


>SB_28855| Best HMM Match : SCP2 (HMM E-Value=0.0011)
          Length = 66

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = -1

Query: 382 DLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGPLLK 269
           D V++  G LNP  A+M GKL I G++M+A KL  L+K
Sbjct: 23  DFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMK 60


>SB_3125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1268

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = -1

Query: 382 DLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGPLLK 269
           D V++  G LNP  A+M GKL I G++M+A KL  L+K
Sbjct: 228 DFVKMFKGQLNPTQAFMAGKLKIKGDMMVAMKLEKLMK 265


>SB_19024| Best HMM Match : Thiolase_C (HMM E-Value=5.4e-36)
          Length = 330

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 415 KADTTYAIADADLVQIASGALNPQ 344
           KAD T  + D D +Q+ +G LNPQ
Sbjct: 232 KADCTITMKDNDFIQLMAGKLNPQ 255


>SB_29317| Best HMM Match : Sushi (HMM E-Value=6.9e-26)
          Length = 803

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 422 EWKGRYDLCNCRC 384
           EWKGRY LC  +C
Sbjct: 106 EWKGRYPLCIAKC 118


>SB_46504| Best HMM Match : DUF1373 (HMM E-Value=7.5)
          Length = 293

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 207 KTLTPKLFFIVKLIVSNLASDLSKGPSFWASMMLPAXLSF 326
           K+L PKL  I++ +   + +D+S G   W  + LP    F
Sbjct: 210 KSLVPKLIEIIRRLYGRITTDMSMGK--WKRVTLPVVQFF 247


>SB_27103| Best HMM Match : Lipoprotein_3 (HMM E-Value=10)
          Length = 476

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 307 NIMLAQKLGPLLKSDAKFETINLTIKNNLGVRVFA 203
           N+  AQ+  P+ K+DAKF     T   NL +R+ A
Sbjct: 336 NVASAQRKSPIQKNDAKFSDPARTRSWNLLIRIQA 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,142,397
Number of Sequences: 59808
Number of extensions: 231154
Number of successful extensions: 442
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)