Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0210.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    22   3.1  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    22   3.1  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    22   3.1  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    22   3.1  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   3.1  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.1  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   3.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   7.1  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.4  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 21  KLHNEKEKLLEERTSC 36


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 21  KLHNEKEKLLEERTSC 36


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 21  KLHNEKEKLLEERTSC 36


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 21  KLHNEKEKLLEERTSC 36


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 254 KLHNEKEKLLEERTSC 269


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 254 KLHNEKEKLLEERTSC 269


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 254 KLHNEKEKLLEERTSC 269


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 254 KLHNEKEKLLEERTSC 269


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 254 KLHNEKEKLLEERTSC 269


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 345 KLHT*KENLXSQATSC 298
           KLH  KE L  + TSC
Sbjct: 243 KLHNEKEKLLEERTSC 258


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 376 LNQHLQLHKSYLPFHSS 426
           L  H++LH    P+H S
Sbjct: 25  LKTHMRLHTGEKPYHCS 41


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 75  YNKKNNIYHSLYIFSY 122
           YN  NN Y  LY  +Y
Sbjct: 89  YNYNNNNYKKLYCNNY 104


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 75  YNKKNNIYHSLYIFSY 122
           YN  NN Y  LY  +Y
Sbjct: 89  YNYNNNNYKKLYCNNY 104


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 75  YNKKNNIYHSLYIFSY 122
           YN  NN Y  LY  +Y
Sbjct: 89  YNYNNNNYKKLYCNNY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,708
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)