Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0210.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family...    52   2e-07
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    27   7.0  
At5g44880.1 68418.m05503 hypothetical protein similar to unknown...    27   9.3  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    27   9.3  
At1g30800.1 68414.m03766 expressed protein ; expression supporte...    27   9.3  
At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:...    27   9.3  

>At5g42890.1 68418.m05227 sterol carrier protein 2 (SCP-2) family
           protein similar to sterol carrier protein-2 [Homo
           sapiens] GI:432973; contains Pfam profile PF02036: SCP-2
           sterol transfer family
          Length = 123

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 20/49 (40%), Positives = 34/49 (69%)
 Frame = -1

Query: 424 KSGKADTTYAIADADLVQIASGALNPQVAYMKGKLXIAGNIMLAQKLGP 278
           + GK D T++  D D V++A+G +NPQ+A+++G + I G++  AQK  P
Sbjct: 66  EGGKVDATFSFKDDDFVKVATGKMNPQMAFIRGAMKIKGSLSAAQKFTP 114


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 174 IKWKLLFSVIRMLLNKADMKRYINCDKCYFFYCTGK 67
           +KW+ +FSV  +  N  D   +  C   Y+F  TG+
Sbjct: 262 VKWEKMFSVNILSTNCLDANFWKLCLAAYYFRSTGR 297


>At5g44880.1 68418.m05503 hypothetical protein similar to unknown
           protein (pir||T00729)
          Length = 161

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 111 YINCDKCYFFYCTGKF 64
           Y  C++CY F+C+ +F
Sbjct: 142 YNRCEECYIFFCSKEF 157


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 213 LTPKLFFIVKLIVSNLASDLSKGPSFW 293
           + P+  FIV+L+ + +AS +S G ++W
Sbjct: 538 IPPRSMFIVQLVATIVASTVSFGTTWW 564


>At1g30800.1 68414.m03766 expressed protein ; expression supported
           by MPSS
          Length = 239

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -1

Query: 457 PQVPSCSRRRPKSGKADTTYAIADADLVQIASGA 356
           P  PS  RR P    +DT    A A  V  ++G+
Sbjct: 195 PFQPSSRRRHPDGSNSDTNQTSASASTVHFSTGS 228


>At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 824

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 9   PXPQVISLHL*VVNGI*IEICQYNKKNNIYHSLYIF 116
           P P+  S+ L    G  I  C +   NNI H L++F
Sbjct: 87  PIPKFTSMMLVRNYGFQISACHWGCSNNITHFLFLF 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,187
Number of Sequences: 28952
Number of extensions: 165305
Number of successful extensions: 315
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)