Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:...    37   0.35 
UniRef50_Q1YSZ4 Cluster: Peptidyl-prolyl cis-trans isomerase D; ...    35   1.4  
UniRef50_A2DT32 Cluster: Beige/BEACH domain containing protein; ...    34   2.5  
UniRef50_Q2SSH8 Cluster: Membrane protein, putative; n=3; Mycopl...    33   3.3  
UniRef50_A5E5V3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q22N18 Cluster: Ubiquitin-activating enzyme E1 family p...    32   7.6  

>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
           Ymf77 - Tetrahymena pigmentosa
          Length = 1260

 Score = 36.7 bits (81), Expect = 0.35
 Identities = 15/38 (39%), Positives = 29/38 (76%)
 Frame = -1

Query: 119 LFIYLLNSVFVKQSLYYIHSIQILESESFSEFVIYLIN 6
           +FIY+ N++F+K  +Y+I +I I E +SF  +++Y+I+
Sbjct: 840 IFIYINNNIFIKLIIYFI-NIFIYEIKSFPYYILYIIS 876


>UniRef50_Q1YSZ4 Cluster: Peptidyl-prolyl cis-trans isomerase D;
           n=1; gamma proteobacterium HTCC2207|Rep: Peptidyl-prolyl
           cis-trans isomerase D - gamma proteobacterium HTCC2207
          Length = 618

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = -1

Query: 413 PSICDLDLSKAEVFTYVEDSNPRYKIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRK 234
           P++  +DLS  ++ TY ED+N RY+   ++  I D + LN  L F  + S   ++ L+R 
Sbjct: 199 PAVDAVDLSDEQIATYYEDNNQRYQAPEQV--IIDYIELNPEL-FSATQSVAEEQILARY 255

Query: 233 EE 228
           EE
Sbjct: 256 EE 257


>UniRef50_A2DT32 Cluster: Beige/BEACH domain containing protein;
           n=1; Trichomonas vaginalis G3|Rep: Beige/BEACH domain
           containing protein - Trichomonas vaginalis G3
          Length = 2486

 Score = 33.9 bits (74), Expect = 2.5
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 9/117 (7%)
 Frame = -1

Query: 341 KIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRKEEFLWPTT*NIISVTLD*I*HLN- 165
           KI S+L ++S   A    +KFI +++    K +S+ + F WP    ++ +    +     
Sbjct: 246 KIYSQLLTVSSQEAQ---IKFIPTLAGKFAKEISKIDNFKWPEEKQVLVLPSQELYEARY 302

Query: 164 -----KLLEMILNKPEKYKLLFIYLLNSVFVKQSLYYIHSI-QILESESF--SEFVI 18
                K  +   N   KY    I  +N +  K   YY+  I  +LE+  F   EF+I
Sbjct: 303 TFSEVKTFQNGFNPKRKYIFKKIKDINQLIPKDEAYYVDMIDNLLENNQFCVQEFII 359


>UniRef50_Q2SSH8 Cluster: Membrane protein, putative; n=3;
           Mycoplasma|Rep: Membrane protein, putative - Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC27343 / NCTC 10154)
          Length = 1646

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -1

Query: 359 DSNPRYKIGSRLFSISDS-VALNEFLKFITSMSENIKKSLS 240
           D + +YKIGS + + S+  + ++EF+K +T    NIK SL+
Sbjct: 325 DDDKKYKIGSGVSTKSNKELVIDEFIKRLTEFKNNIKSSLT 365


>UniRef50_A5E5V3 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 958

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 22/74 (29%), Positives = 38/74 (51%)
 Frame = +1

Query: 184 SKVTDIIFYVVGHKNSSLRDKLFLIFSDILVINFRNSFSATESEMENSRDPILYLGLESS 363
           +K++  + Y++G    SL+D L L    IL+ NF++   ++ +E + S   I     ESS
Sbjct: 768 NKISATLDYLLGKSPLSLKDLLPLFPETILINNFKDEIVSSLNEYKQSLQGINLKIQESS 827

Query: 364 T*VKTSALLRSKSQ 405
           T + T  L   K +
Sbjct: 828 TLLSTLKLEAQKEE 841


>UniRef50_Q22N18 Cluster: Ubiquitin-activating enzyme E1 family
            protein; n=1; Tetrahymena thermophila SB210|Rep:
            Ubiquitin-activating enzyme E1 family protein -
            Tetrahymena thermophila SB210
          Length = 3915

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 366  VGENFSFAQI*IADTWKYSSESCSSVFTIHTVTSSM-GSLPFLVXLNPPWRIK 521
            +G+NF  AQ  I D W YS + C +   IH ++ S    L  L+ LN    IK
Sbjct: 951  IGQNFQIAQG-IQD-WSYSKKGCKNKIAIHLLSGSQHQELQVLLKLNKTVEIK 1001


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 495,931,320
Number of Sequences: 1657284
Number of extensions: 9153455
Number of successful extensions: 22302
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22297
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)