Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    31   0.11 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    25   9.7  
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    25   9.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.7  

>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = +1

Query: 193 TDIIFYVVGHKNSSLRDKLFLIFSDILVINFRNSFSATESEMENSRDPILYLGLESST*V 372
           T++  Y +  +N    DKLF + ++I V N  N+F A  +E+ N + P L L  +S+  V
Sbjct: 501 TEMSIYNLPGENEE--DKLFDVTNEIAVENKSNAFYARINELVNEKAPELILN-KSNASV 557

Query: 373 KTSALLRSKSQ 405
            T  L    S+
Sbjct: 558 STIELFSGSSK 568


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 37  LSLSRICILCI*YKLCFTNTLFN 105
           L   RIC+LC+ YKL   + + N
Sbjct: 103 LCFRRICLLCVFYKLLSCDHIVN 125


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 19  ITNSLKLSLSRICILCI*YKLCFTNT 96
           +   ++L + ++ +LC+ Y LC  NT
Sbjct: 78  VDRKIRLQIHQLHLLCLTYHLCTRNT 103


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 481 KEPIDEVTVWIVNTELQLSLL 419
           ++PIDE T WI   E+  SL+
Sbjct: 47  RDPIDENTFWINPLEVPFSLM 67


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 310 SEMENSRDPILYLGLESST*VKTSALLRSKSQILGNTAV-KVAAPYSQSTQS 462
           S +E    PI+   +E++     S +LR +S +L NT++   +AP   +  S
Sbjct: 116 SSLEPVFSPIVTAKIENALLKYKSTILRHQSPLLANTSISSFSAPIDANINS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,540
Number of Sequences: 5004
Number of extensions: 43905
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)