Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0795 - 6257985-6258149,6258276-6258380,6259196-6259328,626...    28   5.6  
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081...    28   5.6  
11_02_0109 + 8375699-8375776,8376461-8376877,8376980-8377243,837...    27   9.9  
06_01_0099 + 824557-825532,826090-826245,826422-828064                 27   9.9  

>07_01_0795 -
           6257985-6258149,6258276-6258380,6259196-6259328,
           6260225-6260289,6260569-6261642,6262328-6262433,
           6262872-6263044,6263352-6263765
          Length = 744

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 395 DLSKA-EVFTYVEDSNPRYKIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRKEEFLW 219
           D  KA E++T + +SN +    +    IS S  L ++ + +    + +   +S  +EFLW
Sbjct: 533 DYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLW 592


>01_06_0556 + 30207124-30207581,30207692-30207901,30208016-30208100,
            30208517-30208676,30208768-30208844,30208985-30209032,
            30209504-30209594,30209703-30210004,30210214-30210495,
            30210695-30211011,30211113-30211273,30211556-30211665,
            30211752-30211902,30212438-30212578,30212688-30212857,
            30213485-30213817,30213981-30214271,30214356-30214439,
            30214620-30214753,30214946-30215173,30215273-30215444,
            30215621-30215875,30215963-30216232
          Length = 1509

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +1

Query: 202  IFYVVGHKNSSLRDKLFLI---FSDILVINFRNS 294
            IF+ VGHK  S +D L +I   ++ +L + F NS
Sbjct: 1270 IFWRVGHKMESSKDLLVIIGSMYAAVLFVGFENS 1303


>11_02_0109 +
           8375699-8375776,8376461-8376877,8376980-8377243,
           8378402-8378806
          Length = 387

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 211 VVGHKNSSLRDKLFLIFSDILVINFRNSFSATESEMENSRDPILYLGLE 357
           +  H   S+ DKLF +F+       R   +  ESE+E S  P++ L L+
Sbjct: 343 IASHFGESILDKLFAVFA-------RYFTNCIESEVEKSPVPVITLSLQ 384


>06_01_0099 + 824557-825532,826090-826245,826422-828064
          Length = 924

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 449 CEYGAATFTAVFPSICDLDLSKAEVFTYVEDSNP 348
           C YG A F+   PS+ D   +  +VFT    S P
Sbjct: 115 CSYGHAIFSGNAPSLKDTTFAIVDVFTGTSVSPP 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,098
Number of Sequences: 37544
Number of extensions: 221089
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)