Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.5  
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_5259| Best HMM Match : DUF573 (HMM E-Value=0.58)                    28   5.8  
SB_38780| Best HMM Match : Astacin (HMM E-Value=0)                     27   7.6  
SB_4872| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.6  
SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)                    27   7.6  

>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 148 IISNSLFRC*I*SKVTDIIFYVVGHKNSSLRDKLFLIFSDILVINFRNSFS 300
           ++   +F C +   V  +  Y+V H N+++   L+L+F+      F+N F+
Sbjct: 315 VVDRQMFDCQVPLWVI-MFMYMVAHSNAAINPCLYLVFNQSFREGFKNIFN 364


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
 Frame = -1

Query: 440 GAATFTAVFPSICDLDLSKAEVFTYVEDSN-----PRYK---IGSRLFSISDSVALNEFL 285
           G++T  A+   I DLD++  E++ YV+D+      P+ K   I + + S++ S A  +F 
Sbjct: 427 GSSTTEALITMINDLDIADTELWKYVDDTTISETVPKSKASTIQAAVNSLASSAASXKF- 485

Query: 284 KFITSMSENIKKSLSRKEEFLWPTT*NIISV 192
           +   S  + ++ S S  + +  P   N + +
Sbjct: 486 QLNESRCKEMRISFSTSDTYFDPIVVNDVEI 516


>SB_5259| Best HMM Match : DUF573 (HMM E-Value=0.58)
          Length = 229

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 301 ATESEMENSRDPILYLGLESST*VKTSALLRSKSQILGNTAVKVAAPYSQSTQSPRQW 474
           +T++  E  ++P +Y  L+       S +  SK+ I G TAV   A   Q + S  +W
Sbjct: 155 STKTPSETKKNPQMYRSLQGRV---MSQVTTSKAPISGTTAVSNMASTKQQSTSGVRW 209


>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 1153

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 49  RICILCI*YKLCFTNTLFNK*MKSNL 126
           R+  LC  Y LC TNT FN  ++  L
Sbjct: 291 RLLELCSLYHLCITNTFFNVKLRHRL 316


>SB_4872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
 Frame = -1

Query: 407 ICDLDLSKAEVFTYVEDSN-----PRYKIG---SRLFSISDSVALNEFLKFITSMSENIK 252
           I DLD++  E++ YV+D+      P+ KI    + + S++ S A N+F +   S  + ++
Sbjct: 165 INDLDIADTELWKYVDDTTISETVPKCKISTIQAAVDSLASSAASNKF-ELNESKCKEMR 223

Query: 251 KSLSRKEEFLWPTT*NIISV 192
            S S  + +  P   N + +
Sbjct: 224 ISFSTSDTYFDPIVVNDVEI 243


>SB_56617| Best HMM Match : RVT_1 (HMM E-Value=0.04)
          Length = 447

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
 Frame = -1

Query: 407 ICDLDLSKAEVFTYVEDSN-----PRYKIG---SRLFSISDSVALNEFLKFITSMSENIK 252
           I DLD++  E++ YV+D+      P+ K+    + + S++ S A N+F +   S  + ++
Sbjct: 289 INDLDIADTELWKYVDDTTISETVPKSKVSTIQAAVDSLASSAASNKF-QLNESKCQEMR 347

Query: 251 KSLSRKEEFLWPTT*NIISV 192
            S S  + +  P   N + +
Sbjct: 348 ISFSTSDTYFDPIVVNDVEI 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,809
Number of Sequences: 59808
Number of extensions: 271769
Number of successful extensions: 657
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)