Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of Charl...    31   2.7  
AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.               31   2.7  
AB018273-1|BAA34450.1| 1004|Homo sapiens KIAA0730 protein protein.     31   2.7  

>AL157766-1|CAI13922.2| 4432|Homo sapiens spastic ataxia of
            Charlevoix-Saguenay (sacsin) protein.
          Length = 4432

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 280  NFRNSFSATESEMENSRDPILYLGLESST*VKTSALL-----RSKSQILGNTAVKVAAPY 444
            + +N      S++EN RD  LYL  +    VK+S L+       KS+I GN  V++    
Sbjct: 3740 SLQNDSVKVRSDLENVRDLALYLPSQDGRLVKSSILVFDDAPHYKSRIQGNIGVQMLVDL 3799

Query: 445  SQ 450
            SQ
Sbjct: 3800 SQ 3801


>AF193556-1|AAF31262.1| 3829|Homo sapiens sacsin protein.
          Length = 3829

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 280  NFRNSFSATESEMENSRDPILYLGLESST*VKTSALL-----RSKSQILGNTAVKVAAPY 444
            + +N      S++EN RD  LYL  +    VK+S L+       KS+I GN  V++    
Sbjct: 3137 SLQNDSVKVRSDLENVRDLALYLPSQDGRLVKSSILVFDDAPHYKSRIQGNIGVQMLVDL 3196

Query: 445  SQ 450
            SQ
Sbjct: 3197 SQ 3198


>AB018273-1|BAA34450.1| 1004|Homo sapiens KIAA0730 protein protein.
          Length = 1004

 Score = 31.1 bits (67), Expect = 2.7
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +1

Query: 280 NFRNSFSATESEMENSRDPILYLGLESST*VKTSALL-----RSKSQILGNTAVKVAAPY 444
           + +N      S++EN RD  LYL  +    VK+S L+       KS+I GN  V++    
Sbjct: 312 SLQNDSVKVRSDLENVRDLALYLPSQDGRLVKSSILVFDDAPHYKSRIQGNIGVQMLVDL 371

Query: 445 SQ 450
           SQ
Sbjct: 372 SQ 373


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,264,617
Number of Sequences: 237096
Number of extensions: 1312637
Number of successful extensions: 2011
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2011
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)