Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0209.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28570.1 68416.m03567 AAA-type ATPase family protein contains...    29   1.5  
At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family prot...    28   3.6  
At5g05510.1 68418.m00598 protein kinase-related low similarity t...    28   4.7  
At4g23940.1 68417.m03443 FtsH protease, putative contains simila...    28   4.7  
At3g49040.1 68416.m05357 F-box family protein contains F-box dom...    28   4.7  
At5g33370.1 68418.m03962 GDSL-motif lipase/hydrolase family prot...    27   6.2  
At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family pr...    27   6.2  
At2g13690.1 68415.m01510 PRLI-interacting factor, putative simil...    27   8.3  

>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 306 CGTKRVPKVYNEYVGKY*EKFISQGRIFMANYIEYNICDFG 184
           CG +R+      +VGK  +  I +GR+ M  +IE + C FG
Sbjct: 339 CGQERILVFTTNHVGKLDQALIRRGRMDM--HIELSYCTFG 377


>At2g41240.2 68415.m05093 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 241

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 317 ISDSVALNEFLKFITSMSENIKKSLSRKEE 228
           +S S  +++ LK+I  + E +KK + +KEE
Sbjct: 96  LSVSATVSQALKYIPELQEQVKKLMKKKEE 125


>At2g41240.1 68415.m05092 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 242

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 317 ISDSVALNEFLKFITSMSENIKKSLSRKEE 228
           +S S  +++ LK+I  + E +KK + +KEE
Sbjct: 97  LSVSATVSQALKYIPELQEQVKKLMKKKEE 126


>At3g04290.1 68416.m00454 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile: lipase/acylhydrolase
           with GDSL-like motif
          Length = 366

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 202 IFYVVGHKNSSLRDKLFLIFSDILVINFRNSFSATESEMEN 324
           +F++V      ++ + F +F D LV N  N +  T +  +N
Sbjct: 14  LFFIVTFLAPQVKSRAFFVFGDSLVDNGNNDYLVTTARADN 54


>At5g05510.1 68418.m00598 protein kinase-related low similarity to
           SP|O60566 Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta (EC 2.7.1.-) {Homo sapiens}
          Length = 471

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 362 EDSNPRYKIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRKEEFL 222
           ED+   Y++G +  +         +L+F+T M  + KK   R+E+ L
Sbjct: 122 EDAEKMYRLGVQNLAEPMDELQKSYLQFVTRMERHKKKKTQRQEQKL 168


>At4g23940.1 68417.m03443 FtsH protease, putative contains
           similarity to zinc dependent protease GI:7650138 from
           [Arabidopsis thaliana]
          Length = 946

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 350 PRYKIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRKEE 228
           PRY++G +L+++ +   L++     T   E IK+    K++
Sbjct: 89  PRYRVGDKLYNLKEREDLSKGTNAATGAFEFIKRKFDSKKK 129


>At3g49040.1 68416.m05357 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 415

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 274 RVCRKILRKVYLARKNFYGQ 215
           RVC K LRK++L + +FYG+
Sbjct: 157 RVCLKSLRKLHLYKVHFYGK 176


>At5g33370.1 68418.m03962 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 366

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 244 KLFLIFSDILVINFRNSFSATESEMEN 324
           + FL+F D LV N  N F AT +  +N
Sbjct: 29  RAFLVFGDSLVDNGNNDFLATTARADN 55


>At3g56980.1 68416.m06342 basic helix-loop-helix (bHLH) family
           protein
          Length = 258

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 317 ISDSVALNEFLKFITSMSENIKKSLSRKEEFL 222
           +S    ++  LK+I  + E +KK + +KEE L
Sbjct: 112 LSIPATVSRSLKYIPELQEQVKKLIKKKEELL 143


>At2g13690.1 68415.m01510 PRLI-interacting factor, putative similar
           to PRLI-interacting factor G [Arabidopsis thaliana]
           GI:11139264 (PMID:9765207); supporting cDNA
           gi|26450291|dbj|AK117606.1|
          Length = 544

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 392 LSKAEVFTYVEDSNPRYKIGSRLFSISDSVALNEFLKFITSMSENIKKSLSRKEEFLWPT 213
           L   E   + ED   + +    ++S  D        +F ++ +EN++ SLS+K   +W  
Sbjct: 255 LKYLEAVPWTEDEEEKLRRLLGIYSFDDDAVSEILARFNSNETENLQDSLSKK--LVWSI 312

Query: 212 T 210
           T
Sbjct: 313 T 313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,836,014
Number of Sequences: 28952
Number of extensions: 204282
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)