Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0208.Seq
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 262  PASEGC-TSASSESAPSDQPIYPD 330
            P +  C   ASS  APS  P+ PD
Sbjct: 2279 PENTECHPDASSTMAPSTTPMVPD 2302


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 453 SLHQRGPTPSDPAQTQSPS-GREEEG 527
           ++HQ+GP    P   Q P+ G++  G
Sbjct: 197 NMHQQGPPHQQPPIQQQPNQGQQPPG 222


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +3

Query: 453 SLHQRGPTPSDPAQTQSPS-GREEEG 527
           ++HQ+GP    P   Q P+ G++  G
Sbjct: 199 NMHQQGPPHQQPPIQQQPNQGQQPPG 224


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 460 TKEAQHHPIRHKHSHQ 507
           TK   HH I+ +H HQ
Sbjct: 101 TKFNPHHEIKLQHLHQ 116


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 251 LGPSYKSGQVTSWLNALTNSKVLWPLLE 168
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 251 LGPSYKSGQVTSWLNALTNSKVLWPLLE 168
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,441
Number of Sequences: 336
Number of extensions: 2317
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)