Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0208.Seq
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    65   6e-12
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    27   2.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.6  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.1  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.1  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.1  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   8.1  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 65.3 bits (152), Expect = 6e-12
 Identities = 30/56 (53%), Positives = 39/56 (69%)
 Frame = +2

Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 391
           L +  K  +  R+QR++ +L  RLKVPP I QF +TLDK TA  +FK+L KYRPET
Sbjct: 46  LSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 27/49 (55%), Positives = 33/49 (67%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYSASSVRRLYFSVV*KCP 305
           NPLF  RP++F IGQ IQP RDLSRFV+WP+Y     RR   ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 32.7 bits (71), Expect = 0.040
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +1

Query: 496 HSHQVVEKKKAQLVVIAHDVDPIDWFSF 579
           H   ++E KKA+LV+IA DVDPI+   F
Sbjct: 138 HVVALIEAKKAKLVLIASDVDPIELVVF 165


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 146 QENCESSLREEAKELCYWSGHSANS*LVQICKMAQVFRIQRQKAVLQRRL 295
           +E  E SL+EE ++ C W  H     +  +   A++ ++ R+   L  RL
Sbjct: 115 KERLEVSLKEEHQDNCLWRLHKFPPDIYHLSVSAELVQVGRRFNSLSTRL 164


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 272 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 373
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 500  LCLCRIGWC 474
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -3

Query: 454 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 284
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 344 TAKGLFKILEKYR 382
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 247 PSIPHPASEGCTSASSESAPSDQPIYPDTGQDYS 348
           PS P+ +S    SAS  S+P+     P T +  S
Sbjct: 314 PSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -2

Query: 272 SDAGCGILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLN 138
           S AG G L   + +GQ+  + N  ++ KV+ PL+   I +++GL+
Sbjct: 166 SFAGLGFLA-IFLAGQLKMFRNKTSSWKVVVPLVPLSIASWIGLS 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,561
Number of Sequences: 5004
Number of extensions: 35971
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)