Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0208.Seq
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 71 7e-13
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 71 7e-13
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 54 6e-08
01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892 30 1.5
07_03_1422 + 26462871-26463434,26463772-26463897 29 2.7
07_03_1414 - 26403361-26403969 29 2.7
07_03_1413 - 26396426-26396890 29 2.7
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 29 2.7
04_04_0188 - 23433753-23436572 29 3.6
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 6.2
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 27 8.2
05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033 27 8.2
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 27 8.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 388
L + K +V RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 44 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPK 251
NPLFEKRPK F IG + P +DL RFV+WPK
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPK 52
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
H ++E+ KAQLVVIAHDVDPI+
Sbjct: 134 HVTYLIEQSKAQLVVIAHDVDPIE 157
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 70.9 bits (166), Expect = 7e-13
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 388
L + K +V RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 28 LHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPK 251
NPLFEKRPK F IG + P +DL RFV+WPK
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPK 36
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
H ++E+ KAQLVVIAHDVDPI+
Sbjct: 118 HVTYLIEQSKAQLVVIAHDVDPIE 141
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 54.4 bits (125), Expect = 6e-08
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPK 251
NPLFEKRPK F IG + P +DL RFVRWPK
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPK 53
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 388
L + + + RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 45 LHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
H ++E+ KAQLVVIAHDVDPI+
Sbjct: 119 HVTYLIEQSKAQLVVIAHDVDPIE 142
>01_06_1750 + 39651202-39651295,39651815-39651888,39653611-39653892
Length = 149
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 439 CQER*ASTKEAQHHPIRHKHSHQVVEKKKAQLVVIA-HDVDPIDW 570
C ER HP RH+H + E A LV+ + + PI+W
Sbjct: 33 CAERGREKGGRSGHPARHRHRRDLEEAIPAILVIFSLYPSKPIEW 77
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 287 AEVQPSDAGCGILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 129
A +P+ + P Y G+V + + +T + L P LEE GL L D
Sbjct: 68 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1414 - 26403361-26403969
Length = 202
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -2
Query: 287 AEVQPSDAGCGILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 129
A +P+ + P + G++ + + +T + L P LEE + GL L+D
Sbjct: 70 AATKPTALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>07_03_1413 - 26396426-26396890
Length = 154
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -2
Query: 287 AEVQPSDAGCGILGPSYKSGQVTSWLNALTNSKVLWPLLEERIHNFLGLNLFD 129
A +P+ + P Y G+V + + +T + L P LEE GL L D
Sbjct: 22 AATKPTALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 465 RGPTPSDPAQTQSPSGREEE 524
R PTP+ P QT S S REEE
Sbjct: 135 RSPTPAAPPQTASVSQREEE 154
>04_04_0188 - 23433753-23436572
Length = 939
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 209 SANS*LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLD 337
SA + L Q+CK + RQ A R + PPP + + LD
Sbjct: 21 SAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLD 63
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 256 PHPASEGCTSASSESAPSDQP 318
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 112 PPPHWWSK--RLSPRKL*ILSSRRGQRTLLLVRAFSQL--VTCPDL*DGPSIPHP 264
PPP +S+ R P+ L + + Q +++ ++L T D GPS+PHP
Sbjct: 548 PPPDLFSEESREQPKDLIVYDTSLFQTKDEMIKRMNELESTTNADFCHGPSVPHP 602
>05_03_0573 - 15635338-15635502,15637573-15637632,15637776-15638033
Length = 160
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +1
Query: 130 SKRLSPRKL*ILS---SRRGQRTLLLVRAFSQLVTCPD 234
S L PR L +L +RRG R L +VRA S V PD
Sbjct: 13 SPSLGPRSLRLLRGALARRGSRRLGVVRAASAEVAAPD 50
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 166 SSRRGQRTLLLVRAFSQL-VTCPDL*DGPSIPHPASEGCTSASSESAPSDQPIYPD 330
+SR R LLL+ A S L CP P PA+ ASS A D P+ D
Sbjct: 32 TSRSRSRALLLLPASSPLRAFCP----ASRRPSPATCSAAYASSSMATDDNPLLAD 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,395
Number of Sequences: 37544
Number of extensions: 265669
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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