Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0208.Seq
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   9e-12
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        40   0.001
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.8  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   4.8  
SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)                 28   4.8  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   6.4  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 34/94 (36%), Positives = 49/94 (52%)
 Frame = +2

Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
           L +  +  +  ++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET    
Sbjct: 51  LSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEK 110

Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVT 505
                                +P  ++ G N +T
Sbjct: 111 KARLSAKAEKKAEGKEEAPGKKPMLVKYGINHIT 144



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRY 60



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
           H   +VE KKAQLVVIAHDVDPI+
Sbjct: 142 HITSLVENKKAQLVVIAHDVDPIE 165


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +1

Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
           H   +VE KKAQLVVIAHDVDPI+
Sbjct: 51  HITSLVENKKAQLVVIAHDVDPIE 74


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 177  RPKNFAIGQGIQPTRDLSRFVRWPKYSASSVRRLY 281
            RP +  IG G  P R++     W +Y A+ + RL+
Sbjct: 2071 RPTSCGIGNGRLPNRNIKASSEWDRYHAAWLARLH 2105



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 177  RPKNFAIGQGIQPTRDLSRFVRWPKYSASSVRRLY 281
            RP +  IG G  P R++     W +Y A+ + RL+
Sbjct: 3259 RPTSCGIGNGRLPNRNIKASSEWDRYHAAWLARLH 3293


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 469 PLWWRLIFLGNLSFSSFPQPLFPG 398
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)
          Length = 508

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 204 GIQPTRDLSRFVRWPKYSASSVRRLYFSVV*KCPLRSTNLPRH---WTRL 344
           GI    + SR   WP++SAS  R  Y S+   C +R   LP     W +L
Sbjct: 419 GIPSASNDSRTPLWPRFSAS--RSPYMSITPSCEVRHWLLPSRMSLWNKL 466


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 280 TSASSESAPSDQPIYPDTG 336
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 471 PTPSDPAQTQSPSGREEEGAACGHR 545
           PTP+ P +T+SP  R  E AA   R
Sbjct: 235 PTPTIPDRTESPVSRPSESAAVSDR 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,080
Number of Sequences: 59808
Number of extensions: 281472
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)