Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0208.Seq
(582 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal prot... 92 6e-19
AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p pro... 92 6e-19
AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,... 92 6e-19
AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,... 92 6e-19
AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,... 92 6e-19
AY118345-1|AAM48374.1| 475|Drosophila melanogaster LP03545p pro... 30 2.6
AE014297-3240|AAF56068.1| 475|Drosophila melanogaster CG7031-PA... 30 2.6
AE014298-1473|AAF46608.1| 2090|Drosophila melanogaster CG9817-PA... 29 6.1
>X82782-1|CAA58023.1| 271|Drosophila melanogaster ribosomal protein
L7a protein.
Length = 271
Score = 91.9 bits (218), Expect = 6e-19
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
L + + + R+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAK 115
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
+P+ + +GTNTVTK
Sbjct: 116 NVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK 150
Score = 65.3 bits (152), Expect = 6e-11
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
N LFEKRPKNF IGQ +QP RDLSRFVRWPKY
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKY 65
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPIDWFSF 579
+++E+KKAQLVVIAHDVDP++ F
Sbjct: 150 KLIEQKKAQLVVIAHDVDPLELVLF 174
>AY089570-1|AAL90308.1| 271|Drosophila melanogaster RE05022p
protein.
Length = 271
Score = 91.9 bits (218), Expect = 6e-19
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
L + + + R+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
+P+ + +GTNTVTK
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK 150
Score = 65.3 bits (152), Expect = 6e-11
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
N LFEKRPKNF IGQ +QP RDLSRFVRWPKY
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKY 65
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPIDWFSF 579
+++E+KKAQLVVIAHDVDP++ F
Sbjct: 150 KLIEQKKAQLVVIAHDVDPLELVLF 174
>AE014298-903|AAF46169.1| 271|Drosophila melanogaster CG3314-PD,
isoform D protein.
Length = 271
Score = 91.9 bits (218), Expect = 6e-19
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
L + + + R+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
+P+ + +GTNTVTK
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK 150
Score = 65.3 bits (152), Expect = 6e-11
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
N LFEKRPKNF IGQ +QP RDLSRFVRWPKY
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKY 65
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPIDWFSF 579
+++E+KKAQLVVIAHDVDP++ F
Sbjct: 150 KLIEQKKAQLVVIAHDVDPLELVLF 174
>AE014298-902|AAN09172.1| 271|Drosophila melanogaster CG3314-PC,
isoform C protein.
Length = 271
Score = 91.9 bits (218), Expect = 6e-19
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
L + + + R+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
+P+ + +GTNTVTK
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK 150
Score = 65.3 bits (152), Expect = 6e-11
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
N LFEKRPKNF IGQ +QP RDLSRFVRWPKY
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKY 65
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPIDWFSF 579
+++E+KKAQLVVIAHDVDP++ F
Sbjct: 150 KLIEQKKAQLVVIAHDVDPLELVLF 174
>AE014298-901|AAN09170.1| 271|Drosophila melanogaster CG3314-PA,
isoform A protein.
Length = 271
Score = 91.9 bits (218), Expect = 6e-19
Identities = 46/95 (48%), Positives = 59/95 (62%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
L + + + R+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA LFK+LEKYRPE+
Sbjct: 56 LSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAK 115
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
+P+ + +GTNTVTK
Sbjct: 116 KLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTK 150
Score = 65.3 bits (152), Expect = 6e-11
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
N LFEKRPKNF IGQ +QP RDLSRFVRWPKY
Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKY 65
Score = 38.7 bits (86), Expect = 0.006
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPIDWFSF 579
+++E+KKAQLVVIAHDVDP++ F
Sbjct: 150 KLIEQKKAQLVVIAHDVDPLELVLF 174
>AY118345-1|AAM48374.1| 475|Drosophila melanogaster LP03545p
protein.
Length = 475
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 247 PSIPHPASEGCTSASSESAPSDQPIYPDTGQDYS 348
PSI A+ +SASS S D +PD GQ+ S
Sbjct: 307 PSISGSAASSASSASSGSGADDFEEHPDAGQEQS 340
>AE014297-3240|AAF56068.1| 475|Drosophila melanogaster CG7031-PA
protein.
Length = 475
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 247 PSIPHPASEGCTSASSESAPSDQPIYPDTGQDYS 348
PSI A+ +SASS S D +PD GQ+ S
Sbjct: 307 PSISGSAASSASSASSGSGADDFEEHPDAGQEQS 340
>AE014298-1473|AAF46608.1| 2090|Drosophila melanogaster CG9817-PA
protein.
Length = 2090
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 247 PSIPHPASEGCTSASSESAPSDQPIYPDTGQDY 345
P HP S+G +S+ + PS PI P G+DY
Sbjct: 1579 PRPQHPDSDGFSSSHHRTPPSPPPISP--GRDY 1609
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,604,358
Number of Sequences: 53049
Number of extensions: 429701
Number of successful extensions: 1760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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