Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0208.Seq
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 80 1e-15
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 68 4e-12
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 66 1e-11
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 58 3e-09
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.021
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 29 1.8
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 29 3.2
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 29 3.2
U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical pr... 24 4.9
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 7.4
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 7.4
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 7.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 7.4
U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 79.8 bits (188), Expect = 1e-15
Identities = 38/95 (40%), Positives = 52/95 (54%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAK 111
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
RPNT+R G NT+T+
Sbjct: 112 KNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITR 146
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
NPLFEKR +NF IGQ IQP +D++RFV+WPKY
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKY 61
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPID 567
++VE ++AQLV+IAHDV+P++
Sbjct: 146 RLVETRRAQLVLIAHDVNPLE 166
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 68.1 bits (159), Expect = 4e-12
Identities = 38/95 (40%), Positives = 52/95 (54%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXX 403
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 52 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES---- 107
Query: 404 XXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTK 508
RPNT+R G NT+T+
Sbjct: 108 ----------------TEVTKRPNTVRHGVNTITR 126
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
NPLFEKR +NF IGQ IQP +D++RFV+WPKY
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKY 61
Score = 32.3 bits (70), Expect = 0.26
Identities = 12/21 (57%), Positives = 20/21 (95%)
Frame = +1
Query: 505 QVVEKKKAQLVVIAHDVDPID 567
++VE ++AQLV+IAHDV+P++
Sbjct: 126 RLVETRRAQLVLIAHDVNPLE 146
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/56 (51%), Positives = 40/56 (71%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 391
+ + K + R+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
NPLFEKR +NF IGQ IQP +D++RFV+WPKY
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKY 164
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 58.4 bits (135), Expect = 3e-09
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKY 254
NPLFEKR +NF IGQ IQP +D++RFV+WPKY
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKY 164
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +2
Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLD 337
+ + K + R+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 155 VTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.021
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -3
Query: 433 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 314
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +3
Query: 210 QPTRDLSRFVRWPKYSASSVRRLYFSVV*KCPLRSTNLPRHWTRL 344
Q +R +R RW ++ S RR+ FS C RST+ PR RL
Sbjct: 441 QNSRIAARGARWRSEASRSCRRIPFST---CSTRSTSAPRVAIRL 482
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 253 IPHPASEGCTSASSESAPSDQPIYPDTG 336
+P S G T PSD PIYP +G
Sbjct: 194 LPFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 253 IPHPASEGCTSASSESAPSDQPIYPDTG 336
+P S G T PSD PIYP +G
Sbjct: 194 LPFFGSSGATDFPVSGGPSDSPIYPASG 221
>U23139-1|AAK31493.2| 513|Caenorhabditis elegans Hypothetical
protein F13H8.5 protein.
Length = 513
Score = 24.2 bits (50), Expect(2) = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 456 LHQRGPTPSDPAQTQSP 506
L Q P P+ PAQTQ+P
Sbjct: 213 LAQPPPPPAPPAQTQAP 229
Score = 22.2 bits (45), Expect(2) = 4.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 483 DPAQTQSPSGREEEGAACGHRS 548
DP + ++PS + +E GHRS
Sbjct: 251 DPPRPKNPSYKPDEIIVDGHRS 272
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 306 LRSTNLPRHWTRLQLRA 356
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 502 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 371
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 502 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 371
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 502 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 371
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 468 GPTPSDPAQTQSPSG 512
GPTPS+PA+ PSG
Sbjct: 559 GPTPSEPAKPSMPSG 573
>U80837-5|AAB37901.1| 455|Caenorhabditis elegans Hypothetical
protein F07E5.1 protein.
Length = 455
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 523 KAQLVVIAHDVDPIDWFSFC 582
KA +V+ D+D + WFSFC
Sbjct: 106 KALKMVLTQDIDFMIWFSFC 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,594
Number of Sequences: 27780
Number of extensions: 210787
Number of successful extensions: 642
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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