Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0208.Seq
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 457 STKEAQHHPIRHKHSH 504
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 244 GPSIPHPASEGCTSASSESAPSDQ 315
           GP+ P   + GC S    ++PS Q
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQ 90


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 244 GPSIPHPASEGCTSASSESAPSDQ 315
           GP+ P   + GC S    ++PS Q
Sbjct: 67  GPNSPGSFTAGCHSNLLSTSPSGQ 90


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 427 SSFPQPLFPGCFSLRPVFLQ 368
           + FPQ  FP C   R  FL+
Sbjct: 145 AKFPQEFFPECKWSRKGFLR 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,685
Number of Sequences: 438
Number of extensions: 2670
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)