Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0208.Seq
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    71   7e-13
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            70   1e-12
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.0  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   6.9  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 33/55 (60%), Positives = 41/55 (74%)
 Frame = +2

Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 388
           L +  K  +  R+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPK 251
           NPLFE+RPK F IG  + P +DLSR+++WPK
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPK 50



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
           H   ++E+ KAQLVVIAHDVDPI+
Sbjct: 132 HVTYLIEQNKAQLVVIAHDVDPIE 155


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 32/55 (58%), Positives = 41/55 (74%)
 Frame = +2

Query: 224 LVQICKMAQVFRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 388
           L +  K  +  R+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +3

Query: 159 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPK 251
           NPLFE+RPK F IG  + P +DLSR+++WPK
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPK 51



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 16/24 (66%), Positives = 20/24 (83%)
 Frame = +1

Query: 496 HSHQVVEKKKAQLVVIAHDVDPID 567
           H   ++E+ KAQLVVIAHDVDPI+
Sbjct: 133 HVTYLIEQNKAQLVVIAHDVDPIE 156


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 484  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 326
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 445 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 350
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,722
Number of Sequences: 28952
Number of extensions: 201752
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)