Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0207.Seq
(548 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein P... 94 2e-18
UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2; ... 77 3e-13
UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Re... 48 1e-04
UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein b... 48 2e-04
UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7... 46 4e-04
UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1; ... 45 0.001
UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mR... 44 0.002
UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, who... 44 0.002
UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1; Sch... 42 0.009
UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1; ... 40 0.038
UniRef50_Q0DXW3 Cluster: Os02g0730100 protein; n=2; Oryza sativa... 38 0.12
UniRef50_A2X983 Cluster: Putative uncharacterized protein; n=1; ... 38 0.12
UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_... 38 0.15
UniRef50_Q0UMN0 Cluster: Predicted protein; n=15; Pezizomycotina... 38 0.20
UniRef50_A5AKX4 Cluster: Putative uncharacterized protein; n=3; ... 35 1.4
UniRef50_Q38YP0 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1; Dic... 33 5.8
UniRef50_Q7M3Y3 Cluster: Troponin I; n=5; Pectinidae|Rep: Tropon... 32 7.6
>UniRef50_Q8WWY3 Cluster: U4/U6 small nuclear ribonucleoprotein
Prp31; n=42; Eumetazoa|Rep: U4/U6 small nuclear
ribonucleoprotein Prp31 - Homo sapiens (Human)
Length = 499
Score = 94.3 bits (224), Expect = 2e-18
Identities = 67/170 (39%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
Frame = -2
Query: 505 IEKKLDXLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLKLCXX 326
IE+K D QE P++ R +TE RK ANR+
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383
Query: 325 XXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRR 149
H + G R Q++E TK RISKT YGG ++IR
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRD 443
Query: 148 QVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
+ SGTASSVAFTPLQGLEIVNPQAAE + E N KYFS+ + FL V G+K
Sbjct: 444 RSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVKGEK 493
>UniRef50_Q9N592 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 504
Score = 77.0 bits (181), Expect = 3e-13
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Frame = -2
Query: 373 MTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDR--QV*HGPNRLPQIDEKTKVRISKTXX 200
MT+ RK+ANR+ + V G R +D+KT+ R+S+
Sbjct: 377 MTDLRKSANRMNFGELGEDVMQEHMGFDIGQVKTGNVTGGRIRTAAVDQKTRARMSQKMM 436
Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 20
GG TSIR +++GTASSV FTP+QGLEI+NP A E + + YFS++ F
Sbjct: 437 RQMERQKAAGGMTSIRSKMAGTASSVTFTPIQGLEIINPAAQEQQQCSSTSNYFSSSGSF 496
Query: 19 LSVGK 5
+++ +
Sbjct: 497 VNIDR 501
>UniRef50_O80740 Cluster: T13D8.6 protein; n=12; Magnoliophyta|Rep:
T13D8.6 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 511
Score = 48.4 bits (110), Expect = 1e-04
Identities = 38/125 (30%), Positives = 54/125 (43%)
Frame = -2
Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200
Y +T+ RK ANR+ Q G NRL +K++I+
Sbjct: 393 YQVTDMRKLANRMAFGTPEESSLGDGLGEGYGMLGQA--GSNRLRVSSVPSKLKINAKVA 450
Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGF 20
GGAT+ SG SS+AFTP+QG+E+ NPQ A + + YFS + F
Sbjct: 451 KKLKERQYAGGATT-----SGLTSSLAFTPVQGIELCNPQQALGLGSGTQSTYFSESGTF 505
Query: 19 LSVGK 5
+ K
Sbjct: 506 SKLKK 510
>UniRef50_A7AUH1 Cluster: Pre-mRNA processing ribonucleoprotein
binding region-containing protein; n=3;
Piroplasmida|Rep: Pre-mRNA processing ribonucleoprotein
binding region-containing protein - Babesia bovis
Length = 483
Score = 47.6 bits (108), Expect = 2e-04
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -2
Query: 376 AMTEFRKNANRLKLCXXXXXXXXXXXXXXXXH-DRQV*HGPNRLPQIDEKTKVR-ISKTX 203
A++EFRK ANRLK + +G RL +K ++R S+
Sbjct: 358 AVSEFRKYANRLKFGEEAEEEYGLESGDGFGMLGKHTGYGKLRLQHKQQKLQLRKFSRLN 417
Query: 202 XXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSG 23
Q +S +G +SS+ FTPLQG+E+ NP+AA+ + NA N+ G
Sbjct: 418 DIRAAKKRQIAIQSS--GATNGMSSSLVFTPLQGIELCNPEAAKPAPKKKNA-ILDNSGG 474
Query: 22 FLSVG 8
F VG
Sbjct: 475 FFKVG 479
>UniRef50_Q9U0J5 Cluster: Pre-mrna splicing factor, putative; n=7;
Plasmodium|Rep: Pre-mrna splicing factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 566
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = -2
Query: 139 GTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSV 11
G +SS+ FTPLQG+E+ NP + + KYFSNT+ F +
Sbjct: 524 GLSSSLIFTPLQGIELYNPSLINAKNKQTENKYFSNTAEFRKI 566
>UniRef50_Q4PHP9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 561
Score = 44.8 bits (101), Expect = 0.001
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Frame = -2
Query: 373 MTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXXXX 194
MTE RK NR++ G R ++++K R+SK
Sbjct: 412 MTELRKMQNRMEFGKQEEEAMSYDESVGLGMIHSSASGRIRAQGAEDRSKSRMSKANKNR 471
Query: 193 XXXXXQY---GGATSIRRQ--VSGTASSVAFTPLQGLEIVNPQAAETRTN-EG--NAKYF 38
GG +S+ R V GTASS++FTP+QG+E+V+P T +G NAK+F
Sbjct: 472 LAALKTASGAGGMSSVLRGGLVDGTASSLSFTPVQGIELVDPSRQSTAGRAQGVENAKWF 531
Query: 37 SNTSGFLSVGKK 2
L G K
Sbjct: 532 KQGQFSLLRGAK 543
>UniRef50_Q01E93 Cluster: PrpF31 U4/U6*U5 snRNP-associated pre-mRNA
processing factor 31,; n=2; Ostreococcus|Rep: PrpF31
U4/U6*U5 snRNP-associated pre-mRNA processing factor 31,
- Ostreococcus tauri
Length = 505
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -2
Query: 142 SGTASSVAFTPLQGLEIVNPQAAET-RTNEGNAKYFSNTSGFLSVGKK 2
+GTASS+AFTP+QG+E+VNP ++ G FS GF +V ++
Sbjct: 455 AGTASSLAFTPIQGIELVNPNRVQSDGPVSGTDSVFSERRGFSNVARQ 502
>UniRef50_A0DG60 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 463
Score = 44.4 bits (100), Expect = 0.002
Identities = 38/125 (30%), Positives = 55/125 (44%)
Frame = -2
Query: 376 AMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXXX 197
AMTE RK ANRLK + + G +L I + + +SK
Sbjct: 341 AMTEVRKYANRLKFGLEAEDEIKDTGIGLGMLSQGI--GKVKL-HIKKDKPIGLSKKLQQ 397
Query: 196 XXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFL 17
G + G SS+AFTP QG+E++NP+A ++ +YF+ SGF
Sbjct: 398 RLAQAKTQSGGGT-----GGLTSSIAFTPTQGIELINPEAG--YLSKVPDQYFNRESGFR 450
Query: 16 SVGKK 2
+V KK
Sbjct: 451 TVLKK 455
>UniRef50_O42904 Cluster: Pre-mRNA-processing factor 31; n=1;
Schizosaccharomyces pombe|Rep: Pre-mRNA-processing
factor 31 - Schizosaccharomyces pombe (Fission yeast)
Length = 518
Score = 41.9 bits (94), Expect = 0.009
Identities = 33/114 (28%), Positives = 46/114 (40%)
Frame = -2
Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200
YA+TE R+ NR+ Q G R ID +TK+R+ K
Sbjct: 390 YAVTELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARK 449
Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYF 38
A SG SS++FTP+QG+E+VNP + E K+F
Sbjct: 450 AQLQSM-----AQKNPLAASGLQSSLSFTPIQGIELVNPLLQRQQKVEEANKWF 498
>UniRef50_Q5KLE9 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 553
Score = 39.9 bits (89), Expect = 0.038
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Frame = -2
Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200
YA TE RK NR++ G R D ++K ++S+
Sbjct: 423 YAQTELRKLQNRMEFGKAEEEIGVDDETVGLGMIGSA--GRVRGEMADARSKAKLSRANK 480
Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQ-AAETRTNEGNAKYFS 35
G + + SG A+S++FTP+QGLEIV P +A + N ++FS
Sbjct: 481 LRTQLL---GRSVTSNDAASGMATSLSFTPVQGLEIVTPSLSAAQKVQAANDRWFS 533
>UniRef50_Q0DXW3 Cluster: Os02g0730100 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os02g0730100 protein -
Oryza sativa subsp. japonica (Rice)
Length = 402
Score = 38.3 bits (85), Expect = 0.12
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
SG S++AFTP+QG+E+ NP + G + YFS+ F S+ K
Sbjct: 340 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 387
>UniRef50_A2X983 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 480
Score = 38.3 bits (85), Expect = 0.12
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
SG S++AFTP+QG+E+ NP + G + YFS+ F S+ K
Sbjct: 418 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 465
>UniRef50_Q9M002 Cluster: Putative uncharacterized protein T4C21_20;
n=1; Arabidopsis thaliana|Rep: Putative uncharacterized
protein T4C21_20 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 442
Score = 37.9 bits (84), Expect = 0.15
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = -2
Query: 262 GPNRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNP 83
G RL ++K++I+ GGAT+ SG SS+AFT +QG+E+ NP
Sbjct: 366 GSKRLRVSSVQSKLKINAKVAKKLKERQYAGGATT-----SGLTSSLAFTSMQGIELCNP 420
Query: 82 QAA 74
Q A
Sbjct: 421 QQA 423
>UniRef50_Q0UMN0 Cluster: Predicted protein; n=15;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 560
Score = 37.5 bits (83), Expect = 0.20
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Frame = -2
Query: 262 GPNRLPQIDEKTKVRISK---------TXXXXXXXXXQYGG---ATSIRRQ--------V 143
G R QID KT+ ++SK T +G ATS+R Q +
Sbjct: 429 GRLRAQQIDPKTRAKLSKKQGAGWGGDTTLGAASSLKGFGAGGTATSLRAQGLRTGGVGL 488
Query: 142 SGTA-SSVAFTPLQGLEIVNPQAAETRTNEGNA 47
GT SS+AFTP+QGLE+V+P+A E + A
Sbjct: 489 GGTGTSSIAFTPVQGLELVDPRAREEMNRKRKA 521
>UniRef50_A5AKX4 Cluster: Putative uncharacterized protein; n=3; Vitis
vinifera|Rep: Putative uncharacterized protein - Vitis
vinifera (Grape)
Length = 1501
Score = 34.7 bits (76), Expect = 1.4
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEGNAK-YFSNTSGFLSV 11
SG SS F P+QG+++ NPQA + G YFS F +
Sbjct: 1454 SGLTSSSVFPPVQGIKLSNPQAHANQLGSGTQSIYFSEIGTFSKI 1498
>UniRef50_Q38YP0 Cluster: Putative uncharacterized protein; n=1;
Lactobacillus sakei subsp. sakei 23K|Rep: Putative
uncharacterized protein - Lactobacillus sakei subsp.
sakei (strain 23K)
Length = 328
Score = 33.9 bits (74), Expect = 2.5
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 192 YRNNSSTAVLPVLEDKYLVLRLLWPSRLYRVWKSSILKPQKLGPTKAMPSISLIHPGSYL 13
YR T P+LE +LVLRLL ++Y+V++ Q+L T + Y
Sbjct: 174 YRTQPET---PLLETAHLVLRLLADQQVYQVFEKMTFTDQQLRQTLRQQGYDFVSVDQYE 230
Query: 12 WER 4
W R
Sbjct: 231 WLR 233
>UniRef50_Q54HA9 Cluster: Pre-mRNA processing factor 31; n=1;
Dictyostelium discoideum AX4|Rep: Pre-mRNA processing
factor 31 - Dictyostelium discoideum AX4
Length = 1054
Score = 32.7 bits (71), Expect = 5.8
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = -2
Query: 175 YGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTS 26
YGG+ + SG AS VA TP+QGL++ Q + N+ KYFS++S
Sbjct: 999 YGGSMT-SASTSGLAS-VAITPVQGLQLSITQNIREQDNK-TEKYFSSSS 1045
>UniRef50_Q7M3Y3 Cluster: Troponin I; n=5; Pectinidae|Rep: Troponin
I - Chlamys nipponensis akazara (Akazara scallop)
(Japanese scallop)
Length = 292
Score = 32.3 bits (70), Expect = 7.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 464 EVRETPTEADRTKQXEESRQTCQEDEGALRYDRVQEERQPT*TLLTSKMTRTKK 303
E+R E +R ++ EE R+ QE+E LR +R ++ER+ + + + KK
Sbjct: 86 ELRRQRQEEERQRREEEQRRQ-QEEEERLRLEREEQEREEEARRMAEEQKKKKK 138
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,144,767
Number of Sequences: 1657284
Number of extensions: 7135548
Number of successful extensions: 18720
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18630
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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