BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0207.Seq (548 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 42 6e-05 SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 1.8 SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 26 3.2 SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 25 7.3 >SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|Schizosaccharomyces pombe|chr 2|||Manual Length = 518 Score = 41.9 bits (94), Expect = 6e-05 Identities = 33/114 (28%), Positives = 46/114 (40%) Frame = -2 Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200 YA+TE R+ NR+ Q G R ID +TK+R+ K Sbjct: 390 YAVTELRRLQNRVAFGKEEAEVFNFDETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARK 449 Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYF 38 A SG SS++FTP+QG+E+VNP + E K+F Sbjct: 450 AQLQSM-----AQKNPLAASGLQSSLSFTPIQGIELVNPLLQRQQKVEEANKWF 498 >SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces pombe|chr 2|||Manual Length = 424 Score = 27.1 bits (57), Expect = 1.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -3 Query: 162 PVLEDKYLVLRLLWPSRLYRVWK 94 P+ + K L+L LLW S L +WK Sbjct: 59 PLFDQKSLILYLLWFSTLTLLWK 81 >SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosaccharomyces pombe|chr 1|||Manual Length = 648 Score = 26.2 bits (55), Expect = 3.2 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 102 VWKSSILKPQKLGPTKAMPSISLIHP 25 VWKSS+ KP+ PT +S I P Sbjct: 579 VWKSSVTKPET--PTSPQEHVSYIDP 602 >SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 25.0 bits (52), Expect = 7.3 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Frame = -3 Query: 96 KSSILKPQKLGPTKAMPSISLIHPGSY---LWE 7 +SS +K LGP IS HPG Y LWE Sbjct: 190 ESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWE 222 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,836,545 Number of Sequences: 5004 Number of extensions: 29472 Number of successful extensions: 81 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 81 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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