Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0207.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0304 + 2177044-2177046,2177173-2177235,2177323-2177460,217...    42   3e-04
02_05_0621 - 30417044-30417196,30417511-30417586,30418055-304181...    38   0.004
02_05_0819 - 32014236-32016059                                         29   3.2  
04_04_0750 + 27763841-27763972,27764311-27764485,27764908-277649...    24   3.8  
05_04_0437 + 21234261-21234592,21234929-21234997,21235506-212356...    28   5.6  
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180...    27   7.5  
05_03_0427 - 13886814-13887935                                         27   9.9  
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864...    27   9.9  

>07_01_0304 +
           2177044-2177046,2177173-2177235,2177323-2177460,
           2177886-2178778,2178935-2179005,2179132-2179234,
           2180017-2180092,2180870-2180977
          Length = 484

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = -2

Query: 379 YAMTEFRKNANRLKLCXXXXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXX 200
           YA T+  K ANR++                     Q   G  R+     K   +++K   
Sbjct: 367 YAQTDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVAKKFK 426

Query: 199 XXXXXXXQYGGATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSG 23
                   YG + +     SG  SS+AFTP+QG+E+ NPQ+       G  + YFS T  
Sbjct: 427 EKS-----YGSSGA----TSGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGT 477

Query: 22  FLSV 11
           F  +
Sbjct: 478 FSKI 481


>02_05_0621 -
           30417044-30417196,30417511-30417586,30418055-30418157,
           30418269-30418339,30418446-30418789,30419867-30420004,
           30420089-30420151,30420392-30420489,30421049-30421179,
           30422397-30422428
          Length = 402

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 142 SGTASSVAFTPLQGLEIVNPQAAETRTNEG-NAKYFSNTSGFLSVGKK 2
           SG  S++AFTP+QG+E+ NP      +  G  + YFS+   F S+  K
Sbjct: 340 SGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIRGK 387


>02_05_0819 - 32014236-32016059
          Length = 607

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 479 GTPXGEVRETPTEADRTKQXEESRQTCQEDEGALRYDRVQEERQ 348
           G   G V +   + D  +  E+ R++ +E E  +  DR++EER+
Sbjct: 363 GGGRGAVDDREEDMDLEQPREQRRESREEREARIERDRIREERR 406


>04_04_0750 +
           27763841-27763972,27764311-27764485,27764908-27764998,
           27764999-27765133,27765683-27765742,27765876-27765951,
           27766037-27766174,27766509-27767373,27767763-27767865,
           27768101-27768176,27768329-27768393,27768463-27768493,
           27768618-27768725
          Length = 684

 Score = 24.2 bits (50), Expect(2) = 3.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 103 GLEIVNPQAAETRTNEG-NAKYFSNTSGFLSV 11
           G+E+ NPQA       G  + YFS T  F  +
Sbjct: 650 GIELSNPQAHGNLLGSGTQSTYFSETGTFSKI 681



 Score = 22.6 bits (46), Expect(2) = 3.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 142 SGTASSVAFTPLQ 104
           SG  SS+AFTP+Q
Sbjct: 605 SGLTSSLAFTPVQ 617


>05_04_0437 +
           21234261-21234592,21234929-21234997,21235506-21235629,
           21235740-21235745
          Length = 176

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -1

Query: 455 ETPTEADRTKQXEESRQTCQEDEGALRYDRVQEERQPT 342
           E+P++  R +  E     C  DE   RYD +    Q T
Sbjct: 102 ESPSKRPRRRLVEHGHSGCSPDEWQFRYDNLSSITQET 139


>06_01_0237 -
           1808203-1809159,1809246-1809399,1809488-1809636,
           1809715-1809997,1810087-1810192,1810293-1810383,
           1810779-1811270
          Length = 743

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 442 SVGVSRTSPXGVPVXYLVSFRCFPKCRPMCPS 537
           S+G+    P   P+ +LVSFR  P    + P+
Sbjct: 544 SIGLGEDGPTHQPIEHLVSFRAMPNILMLRPA 575


>05_03_0427 - 13886814-13887935
          Length = 373

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 168 VLPVLEDKYLVLRLLWPSRLYRVWKSSILKPQKLGPTKAMPSISLIHPGSYL 13
           VL  + D    LRL   +R++ V+  S LKP +  P   +PS+  +H G  +
Sbjct: 241 VLGRIGDVAYCLRLPARARIHDVFHVSQLKPFRGTPPVDIPSLPQLHDGQVI 292


>03_02_0458 +
           8643804-8643904,8643994-8644091,8644206-8644504,
           8645930-8646460
          Length = 342

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 264 C*TCRSCLACILNLLGTRHL-RCQQSLSRLAF 356
           C  C+S  AC+L LL  RHL  C++  S+L+F
Sbjct: 296 CRVCKSSEACML-LLPCRHLCLCKECESKLSF 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,203,574
Number of Sequences: 37544
Number of extensions: 198329
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)