Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0207.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27398| Best HMM Match : DUF1096 (HMM E-Value=2.3)                   29   2.5  
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      27   7.6  

>SB_27398| Best HMM Match : DUF1096 (HMM E-Value=2.3)
          Length = 200

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 216 MRTFVFSSICGSRFGPC*TCRSCLACILNLLGTRHLRCQQSLSRLAFF 359
           M+ +  S +C +    C   +SC +CI  +      RCQ+ L R   F
Sbjct: 143 MKCYTESKLCMNNDSKCFDSQSCNSCIQQVYSPCFNRCQEMLRRREAF 190


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 166 ATSIRRQVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNA-KYFSNTSGFLS 14
           AT    Q S   ++   T LQ  E  NP A ++  N GN   Y++  + +L+
Sbjct: 338 ATDQAYQQSAYVAATPSTLLQSAEYNNPNAGQSLNNSGNTPAYYTQYTSYLA 389


>SB_6551| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 330

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 254 PTTANRRENEGPHQQD---IAKELTETTAVRRCYQY*KTSIWYC 132
           PT  N+R N+   +Q+       L  TT ++RCYQ     ++YC
Sbjct: 78  PTFENQRFNQYDLRQNPLYYPLGLPNTTVIQRCYQEEAFPLYYC 121


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,089
Number of Sequences: 59808
Number of extensions: 234388
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)