Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0207.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processi...    94   3e-19
AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated ...    94   3e-19
BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.        31   3.5  
BC028415-1|AAH28415.1|  690|Homo sapiens CASC1 protein protein.        31   3.5  
AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma susceptibi...    31   3.5  

>BC117389-1|AAI17390.1|  499|Homo sapiens PRP31 pre-mRNA processing
           factor 31 homolog (S. cerevisiae) protein.
          Length = 499

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 67/170 (39%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
 Frame = -2

Query: 505 IEKKLDXLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLKLCXX 326
           IE+K D  QE            P++                R  +TE RK ANR+     
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383

Query: 325 XXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRR 149
                         H  +   G  R  Q++E TK RISKT           YGG ++IR 
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRD 443

Query: 148 QVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
           + SGTASSVAFTPLQGLEIVNPQAAE +  E N KYFS+ + FL V G+K
Sbjct: 444 RSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVKGEK 493


>AY040822-1|AAK77986.1|  499|Homo sapiens U4/U6 snRNP-associated 61
           kDa protein protein.
          Length = 499

 Score = 94.3 bits (224), Expect = 3e-19
 Identities = 67/170 (39%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
 Frame = -2

Query: 505 IEKKLDXLQEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLKLCXX 326
           IE+K D  QE            P++                R  +TE RK ANR+     
Sbjct: 324 IERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEI 383

Query: 325 XXXXXXXXXXXXXXHDRQV*HGPNRLPQIDEKTKVRISKTXXXXXXXXXQ-YGGATSIRR 149
                         H  +   G  R  Q++E TK RISKT           YGG ++IR 
Sbjct: 384 EEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRD 443

Query: 148 QVSGTASSVAFTPLQGLEIVNPQAAETRTNEGNAKYFSNTSGFLSV-GKK 2
           + SGTASSVAFTPLQGLEIVNPQAAE +  E N KYFS+ + FL V G+K
Sbjct: 444 RSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVKGEK 493


>BC057795-1|AAH57795.1|  716|Homo sapiens CASC1 protein protein.
          Length = 716

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 467 GEVRETPTEADRTK--QXEESRQTCQEDEGALRYDRVQEER 351
           G  ++  T+A+R K  Q EE R+  +E+E  L+Y++ + ER
Sbjct: 3   GSKKKKVTKAERLKLLQEEEERRLKEEEEARLKYEKEEMER 43


>BC028415-1|AAH28415.1|  690|Homo sapiens CASC1 protein protein.
          Length = 690

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 467 GEVRETPTEADRTK--QXEESRQTCQEDEGALRYDRVQEER 351
           G  ++  T+A+R K  Q EE R+  +E+E  L+Y++ + ER
Sbjct: 67  GSKKKKVTKAERLKLLQEEEERRLKEEEEARLKYEKEEMER 107


>AY423543-1|AAQ93499.1|  716|Homo sapiens lung adenoma
           susceptibility 1-like protein protein.
          Length = 716

 Score = 30.7 bits (66), Expect = 3.5
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 467 GEVRETPTEADRTK--QXEESRQTCQEDEGALRYDRVQEER 351
           G  ++  T+A+R K  Q EE R+  +E+E  L+Y++ + ER
Sbjct: 3   GSKKKKVTKAERLKLLQEEEERRLKEEEEARLKYEKEEMER 43


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,838,364
Number of Sequences: 237096
Number of extensions: 1075984
Number of successful extensions: 2360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2354
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)